[English] 日本語
Yorodumi- PDB-2ovo: THE CRYSTAL AND MOLECULAR STRUCTURE OF THE THIRD DOMAIN OF SILVER... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2ovo | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Title | THE CRYSTAL AND MOLECULAR STRUCTURE OF THE THIRD DOMAIN OF SILVER PHEASANT OVOMUCOID (OMSVP3) | |||||||||
Components | OVOMUCOID THIRD DOMAIN | |||||||||
Keywords | PROTEINASE INHIBITOR (KAZAL) | |||||||||
Function / homology | Function and homology information | |||||||||
Biological species | Lophura nycthemera (Silver pheasant) | |||||||||
Method | X-RAY DIFFRACTION / Resolution: 1.5 Å | |||||||||
Authors | Bode, W. / Epp, O. | |||||||||
Citation | Journal: Eur.J.Biochem. / Year: 1985 Title: The crystal and molecular structure of the third domain of silver pheasant ovomucoid (OMSVP3). Authors: Bode, W. / Epp, O. / Huber, R. / Laskowski Jr., M. / Ardelt, W. #1: Journal: Biochemistry / Year: 1982 Title: Thermodynamics and Kinetics of Single Residue Replacements in Avian Ovomucoid Third Domains. Effect on Inhibitor Interactions with Serine Proteinases Authors: Empie, M.W. / Laskowskijunior, M. #2: Journal: Biochemistry / Year: 1983 Title: Structure of the Complex of Streptomyces Griseus Protease B and the Third Domain of the Turkey Ovomucoid Inhibitor at 1.8-Angstroms Resolution Authors: Read, R.J. / Fujinaga, M. / Sielecki, A.R. / James, M.N.G. #3: Journal: J.Mol.Biol. / Year: 1982 Title: Crystallographic Refinement of Japanese Quail Ovomucoid, a Kazal-Type Inhibitor, and Model Building Studies of Complexes with Serine Proteases Authors: Papamokos, E. / Weber, E. / Bode, W. / Huber, R. / Empie, M.W. / Kato, I. / Laskowskijunior, M. #4: Journal: Proc.Natl.Acad.Sci.USA / Year: 1982 Title: Refined Crystal Structure of the Molecular Complex of Streptomyces Griseus Protease B, a Serine Protease, with the Third Domain of the Ovomucoid Inhibitor from Turkey Authors: Fujinaga, M. / Read, R.J. / Sielecki, A. / Ardelt, W. / Laskowskijunior, M. / James, M.N.G. #5: Journal: Colloq.Ges.Biol.Chem. / Year: 1981 Title: Correlation of Amino Acid Sequence with Inhibitor Activity and Specificity of Protein Inhibitors of Serine Proteinases Authors: Laskowskijunior, M. / Empie, M.W. / Kato, I. / Kohr, W.J. / Ardelt, W. / Bogardjunior, W.C. / Weber, E. / Papamokos, E. / Bode, W. / Huber, R. #6: Journal: J.Mol.Biol. / Year: 1981 Title: Crystallization, Crystal Structure Analysis and Molecular Model of the Third Domain of Japanese Quail Ovomucoid, a Kazal Type Inhibitor Authors: Weber, E. / Papamokos, E. / Bode, W. / Huber, R. / Kato, I. / Laskowskijunior, M. | |||||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 2ovo.cif.gz | 18.6 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb2ovo.ent.gz | 13.7 KB | Display | PDB format |
PDBx/mmJSON format | 2ovo.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2ovo_validation.pdf.gz | 413.3 KB | Display | wwPDB validaton report |
---|---|---|---|---|
Full document | 2ovo_full_validation.pdf.gz | 415.9 KB | Display | |
Data in XML | 2ovo_validation.xml.gz | 4.6 KB | Display | |
Data in CIF | 2ovo_validation.cif.gz | 5.7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ov/2ovo ftp://data.pdbj.org/pub/pdb/validation_reports/ov/2ovo | HTTPS FTP |
-Related structure data
Similar structure data |
---|
-Links
-Assembly
Deposited unit |
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
| ||||||||
Atom site foot note | 1: RESIDUE 12 IS A CIS-PROLINE. |
-Components
#1: Protein | Mass: 6044.848 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Lophura nycthemera (Silver pheasant) / References: UniProt: P67954 |
---|---|
#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
---|
-Sample preparation
Crystal | Density Matthews: 1.63 Å3/Da / Density % sol: 24.63 % |
---|---|
Crystal grow | *PLUS Temperature: 20 ℃ / Method: unknown / PH range low: 7 / PH range high: 6 |
Components of the solutions | *PLUS Conc.: 1.0 M / Common name: ammonium sulfate |
-Data collection
Reflection | *PLUS Highest resolution: 1.5 Å / Num. obs: 4837 / % possible obs: 75 % / Rmerge(I) obs: 0.035 |
---|
-Processing
Software | Name: EREF / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Resolution: 1.5→7 Å / Rfactor Rwork: 0.199 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.5→7 Å
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Rfactor obs: 0.199 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |