- PDB-3oex: Crystal Structure of Type I 3-Dehydroquinate Dehydratase (aroD) f... -
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基本情報
登録情報
データベース: PDB / ID: 3oex
タイトル
Crystal Structure of Type I 3-Dehydroquinate Dehydratase (aroD) from Salmonella typhimurium with close loop conformation.
要素
3-dehydroquinate dehydratase
キーワード
LYASE / Structural Genomics / Center for Structural Genomics of Infectious Diseases / CSGID / TIM barrel
機能・相同性
機能・相同性情報
3,4-dihydroxybenzoate biosynthetic process / 3-dehydroquinate dehydratase / 3-dehydroquinate dehydratase activity / chorismate biosynthetic process / aromatic amino acid family biosynthetic process / amino acid biosynthetic process 類似検索 - 分子機能
: / 3-dehydroquinate dehydratase, active site / Dehydroquinase class I active site. / 3-dehydroquinate dehydratase type I / Type I 3-dehydroquinase / Aldolase class I / Aldolase-type TIM barrel / TIM Barrel / Alpha-Beta Barrel / Alpha Beta 類似検索 - ドメイン・相同性
解像度: 1.9→29.53 Å / Cor.coef. Fo:Fc: 0.967 / Cor.coef. Fo:Fc free: 0.945 / SU B: 7.183 / SU ML: 0.096 / Isotropic thermal model: Refined individually / 交差検証法: THROUGHOUT / ESU R Free: 0.145 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD / 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
反射数
%反射
Selection details
Rfree
0.20366
3507
5.1 %
RANDOM
Rwork
0.1518
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obs
0.15443
65729
99.75 %
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all
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65729
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溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.4 Å / 溶媒モデル: BABINET MODEL WITH MASK