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Yorodumi- PDB-3hi1: Structure of HIV-1 gp120 (core with V3) in Complex with CD4-Bindi... -
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-Basic information
Entry | Database: PDB / ID: 3hi1 | ||||||
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Title | Structure of HIV-1 gp120 (core with V3) in Complex with CD4-Binding-Site Antibody F105 | ||||||
Components |
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Keywords | STRUCTURAL PROTEIN/Immune System / HIV / GP120 / CD4 BINDING SITE ANTIBODY / F105 / IMMUNE EVASION / AIDS / Apoptosis / Cell membrane / Cleavage on pair of basic residues / Disulfide bond / Envelope protein / Fusion protein / Glycoprotein / Host-virus interaction / Lipoprotein / Membrane / Palmitate / Transmembrane / Viral immunoevasion / Virion / STRUCTURAL PROTEIN-Immune System COMPLEX | ||||||
Function / homology | Function and homology information Dectin-2 family / positive regulation of plasma membrane raft polarization / positive regulation of receptor clustering / positive regulation of establishment of T cell polarity / virus-mediated perturbation of host defense response / host cell endosome membrane / clathrin-dependent endocytosis of virus by host cell / viral protein processing / fusion of virus membrane with host plasma membrane / fusion of virus membrane with host endosome membrane ...Dectin-2 family / positive regulation of plasma membrane raft polarization / positive regulation of receptor clustering / positive regulation of establishment of T cell polarity / virus-mediated perturbation of host defense response / host cell endosome membrane / clathrin-dependent endocytosis of virus by host cell / viral protein processing / fusion of virus membrane with host plasma membrane / fusion of virus membrane with host endosome membrane / viral envelope / virion attachment to host cell / host cell plasma membrane / virion membrane / structural molecule activity / extracellular region / membrane Similarity search - Function | ||||||
Biological species | Human immunodeficiency virus type 1 Homo sapiens (human) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.9 Å | ||||||
Authors | Kwon, Y.D. / Chen, L. / Zhou, T. / Wu, X. / O'Dell, S. / Cavacini, L. / Hessell, A.J. / Pancera, M. / Tang, M. / Xu, L. ...Kwon, Y.D. / Chen, L. / Zhou, T. / Wu, X. / O'Dell, S. / Cavacini, L. / Hessell, A.J. / Pancera, M. / Tang, M. / Xu, L. / Yang, Z. / Zhang, M.-Y. / Arthos, J. / Burton, D.R. / Dimitrov, D. / Nabel, G.J. / Posner, M. / Sodroski, J. / Wyatt, R. / Mascola, J.R. / Kwong, P.D. | ||||||
Citation | Journal: Science / Year: 2009 Title: Structural basis of immune evasion at the site of CD4 attachment on HIV-1 gp120. Authors: Chen, L. / Do Kwon, Y. / Zhou, T. / Wu, X. / O'Dell, S. / Cavacini, L. / Hessell, A.J. / Pancera, M. / Tang, M. / Xu, L. / Yang, Z.Y. / Zhang, M.Y. / Arthos, J. / Burton, D.R. / Dimitrov, D. ...Authors: Chen, L. / Do Kwon, Y. / Zhou, T. / Wu, X. / O'Dell, S. / Cavacini, L. / Hessell, A.J. / Pancera, M. / Tang, M. / Xu, L. / Yang, Z.Y. / Zhang, M.Y. / Arthos, J. / Burton, D.R. / Dimitrov, D.S. / Nabel, G.J. / Posner, M.R. / Sodroski, J. / Wyatt, R. / Mascola, J.R. / Kwong, P.D. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 3hi1.cif.gz | 593.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb3hi1.ent.gz | 498.4 KB | Display | PDB format |
PDBx/mmJSON format | 3hi1.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/hi/3hi1 ftp://data.pdbj.org/pub/pdb/validation_reports/hi/3hi1 | HTTPS FTP |
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-Related structure data
Related structure data | 3idxC 3idyC 1bbdS 1bbjS S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Refine code: 1
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