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Yorodumi- PDB-1bbd: THREE DIMENSIONAL STRUCTURE OF THE FAB FRAGMENT OF A NEUTRALIZING... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1bbd | ||||||
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Title | THREE DIMENSIONAL STRUCTURE OF THE FAB FRAGMENT OF A NEUTRALIZING ANTIBODY TO HUMAN RHINOVIRUS SEROTYPE 2 | ||||||
Components |
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Keywords | IMMUNOGLOBULIN | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Mus musculus (house mouse) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.8 Å | ||||||
Authors | Tormo, J. / Blaas, D. / Fita, I. | ||||||
Citation | Journal: Protein Sci. / Year: 1992 Title: Three-dimensional structure of the Fab fragment of a neutralizing antibody to human rhinovirus serotype 2. Authors: Tormo, J. / Stadler, E. / Skern, T. / Auer, H. / Kanzler, O. / Betzel, C. / Blaas, D. / Fita, I. #1: Journal: J.Biol.Chem. / Year: 1990 Title: Crystallization and Preliminary X-Ray Diffraction Studies of the Fab Fragment of a Neutralizing Monoclonal Antibody Directed Against Human Rhinovirus Serotype 2 Authors: Tormo, J. / Fita, I. / Kanzler, O. / Blaas, D. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1bbd.cif.gz | 93.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1bbd.ent.gz | 75.1 KB | Display | PDB format |
PDBx/mmJSON format | 1bbd.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/bb/1bbd ftp://data.pdbj.org/pub/pdb/validation_reports/bb/1bbd | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: CIS PROLINE - PRO L 8 / 2: CIS PROLINE - PRO L 101 / 3: CIS PROLINE - PRO L 147 / 4: RESIDUE ARG H 13 IS MISSING SIDE CHAIN ATOMS. / 5: CIS PROLINE - PRO H 152 / 6: CIS PROLINE - PRO H 154 / 7: CIS PROLINE - PRO H 194 |
-Components
#1: Antibody | Mass: 24416.984 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Mus musculus (house mouse) / References: GenBank: 208622, UniProt: Q52L64*PLUS |
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#2: Antibody | Mass: 23588.201 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Mus musculus (house mouse) / References: GenBank: 2072133 |
#3: Chemical | ChemComp-SO4 / |
#4: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 3.45 Å3/Da / Density % sol: 64.37 % | ||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 22 ℃ / pH: 6 / Method: vapor diffusion | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 2.8 Å / Num. obs: 15894 / % possible obs: 93.5 % / Observed criterion σ(F): 2.5 / Num. measured all: 74187 / Rmerge(I) obs: 0.074 |
Reflection shell | *PLUS Highest resolution: 2.8 Å / Lowest resolution: 2.95 Å / % possible obs: 87.9 % / Num. unique obs: 2086 / Rmerge(I) obs: 0.196 |
-Processing
Software | Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Resolution: 2.8→7 Å /
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Refinement step | Cycle: LAST / Resolution: 2.8→7 Å
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Refine LS restraints |
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Software | *PLUS Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 2.8 Å / Lowest resolution: 7 Å / Num. reflection obs: 14494 / σ(F): 2.5 / Rfactor obs: 0.19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |