[English] 日本語
![](img/lk-miru.gif)
- PDB-2lzt: REFINEMENT OF TRICLINIC LYSOZYME. II. THE METHOD OF STEREOCHEMICA... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 2lzt | ||||||
---|---|---|---|---|---|---|---|
Title | REFINEMENT OF TRICLINIC LYSOZYME. II. THE METHOD OF STEREOCHEMICALLY RESTRAINED LEAST-SQUARES | ||||||
![]() | HEN EGG WHITE LYSOZYME | ||||||
![]() | HYDROLASE(O-GLYCOSYL) | ||||||
Function / homology | ![]() Lactose synthesis / Antimicrobial peptides / Neutrophil degranulation / beta-N-acetylglucosaminidase activity / cell wall macromolecule catabolic process / lysozyme / lysozyme activity / defense response to Gram-negative bacterium / killing of cells of another organism / defense response to Gram-positive bacterium ...Lactose synthesis / Antimicrobial peptides / Neutrophil degranulation / beta-N-acetylglucosaminidase activity / cell wall macromolecule catabolic process / lysozyme / lysozyme activity / defense response to Gram-negative bacterium / killing of cells of another organism / defense response to Gram-positive bacterium / defense response to bacterium / endoplasmic reticulum / extracellular space / identical protein binding / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Ramanadham, M. / Sieker, L.C. / Jensen, L.H. | ||||||
![]() | ![]() Title: Refinement of triclinic lysozyme: II. The method of stereochemically restrained least squares. Authors: Ramanadham, M. / Sieker, L.C. / Jensen, L.H. #1: ![]() Title: Refinement of Triclinic Lysozyme. I. Fourier and Least Squares Methods Authors: Hodsdon, J.M. / Brown, G.M. / Sieker, L.C. / Jensen, L.H. #2: ![]() Year: 1989 Title: Triclinic Lysozyme. Some Features of the Structure at 2 Angstroms Resolution Authors: Ramanadham, M. / Sieker, L.C. / Jensen, L.H. #3: ![]() Title: Srlsq Refinement of Triclinic Lysozyme Authors: Ramanadham, M. / Sieker, L.C. / Jensen, L.H. #4: ![]() Title: Structure of Triclinic Lysozyme and its Cu2+ Complex at 2 Angstroms Resolution Authors: Ramanadham, M. / Sieker, L.C. / Jensen, L.H. #5: ![]() Title: Structures of Triclinic Mono-and Di-N-Acetylglucosamine. Lysozyme Complexes-A Crystallographic Study Authors: Kurachi, K. / Sieker, L.C. / Jensen, L.H. #6: ![]() Title: Metal Ion Binding in Triclinic Lysozyme Authors: Kurachi, K. / Sieker, L.C. / Jensen, L.H. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 43.7 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 30.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 418.2 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 419.7 KB | Display | |
Data in XML | ![]() | 10.4 KB | Display | |
Data in CIF | ![]() | 15 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
---|
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
| ||||||||
Atom site foot note | 1: SEE REMARK 5. |
-
Components
#1: Protein | Mass: 14331.160 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() | ||
---|---|---|---|
#2: Chemical | ChemComp-NO3 / #3: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 1.83 Å3/Da / Density % sol: 32.65 % | |||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Crystal grow | *PLUS pH: 4.55 / Method: unknownDetails: taken from Kurachi, K. et al (1976). J. Mol. Biol., 101-11-24. | |||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
|
-Data collection
Reflection | *PLUS Highest resolution: 1.97 Å / Lowest resolution: 9999 Å / Num. obs: 7075 / Rmerge(I) obs: 0.314 / Biso Wilson estimate: 8 Å2 / Num. measured all: 7131 |
---|
-
Processing
Software | Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Rfactor obs: 0.124 / Highest resolution: 1.97 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.97 Å
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 1.97 Å / Rfactor obs: 0.124 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |