SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN ... SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED.
Resolution: 2.3→20 Å / Rfactor Rfree error: 0.0002 / Data cutoff high absF: 10000 / Isotropic thermal model: RESTRAINED / Cross valid method: THROUGHOUT / σ(F): 0 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: THE FINAL MODEL INCLUDES ALL PAPD MAIN CHAIN ATOMS EXCEPT THE LAST TWO RESIDUES AND ALL PAPHNTD1 MAIN CHAIN ATOMS EXCEPT THE FIRST 2 (RESIDUES 1 AND 23). THE FINAL MODEL ALSO MISSES ONE SIDE ...Details: THE FINAL MODEL INCLUDES ALL PAPD MAIN CHAIN ATOMS EXCEPT THE LAST TWO RESIDUES AND ALL PAPHNTD1 MAIN CHAIN ATOMS EXCEPT THE FIRST 2 (RESIDUES 1 AND 23). THE FINAL MODEL ALSO MISSES ONE SIDE CHAIN OF PAPD AND 13 SIDE CHAINS OF PAPHNTD1.THE ELECTRON DENSITY WAS ABSENT FOR THESE EXPOSED RESIDUES THUS THEY WERE MODELLED AS ALANINES
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.2404
1456
5.1 %
RANDOM
Rwork
0.2086
-
-
-
obs
0.2086
28668
99.5 %
-
Solvent computation
Bsol: 40.5143 Å2 / ksol: 0.361159 e/Å3
Displacement parameters
Baniso -1
Baniso -2
Baniso -3
1-
-15.226 Å2
0 Å2
0 Å2
2-
-
7.144 Å2
0 Å2
3-
-
-
8.083 Å2
Refinement step
Cycle: LAST / Resolution: 2.3→20 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
2804
0
56
274
3134
Refine LS restraints
Refine-ID
Type
Dev ideal
X-RAY DIFFRACTION
c_bond_d
0.005607
X-RAY DIFFRACTION
c_bond_d_na
X-RAY DIFFRACTION
c_bond_d_prot
X-RAY DIFFRACTION
c_angle_d
X-RAY DIFFRACTION
c_angle_d_na
X-RAY DIFFRACTION
c_angle_d_prot
X-RAY DIFFRACTION
c_angle_deg
1.25268
X-RAY DIFFRACTION
c_angle_deg_na
X-RAY DIFFRACTION
c_angle_deg_prot
X-RAY DIFFRACTION
c_dihedral_angle_d
X-RAY DIFFRACTION
c_dihedral_angle_d_na
X-RAY DIFFRACTION
c_dihedral_angle_d_prot
X-RAY DIFFRACTION
c_improper_angle_d
X-RAY DIFFRACTION
c_improper_angle_d_na
X-RAY DIFFRACTION
c_improper_angle_d_prot
X-RAY DIFFRACTION
c_mcbond_it
X-RAY DIFFRACTION
c_mcangle_it
X-RAY DIFFRACTION
c_scbond_it
X-RAY DIFFRACTION
c_scangle_it
LS refinement shell
Resolution: 2.3→2.33 Å / Rfactor Rfree error: 0.005 / Total num. of bins used: 29
Rfactor
Num. reflection
% reflection
Rfree
0.293
54
3.7 %
Rwork
0.281
924
-
obs
-
-
98.5 %
Xplor file
Refine-ID
Serial no
Param file
X-RAY DIFFRACTION
1
PROTEIN_REP.PARAM
X-RAY DIFFRACTION
2
WATER_REP.PARAM
X-RAY DIFFRACTION
3
ION.PARAM
+
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