- PDB-2h34: Apoenzyme crystal structure of the tuberculosis serine/threonine ... -
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Basic information
Entry
Database: PDB / ID: 2h34
Title
Apoenzyme crystal structure of the tuberculosis serine/threonine kinase, PknE
Components
Serine/threonine-protein kinase pknE
Keywords
TRANSFERASE / apoenzyme / serine/threonine protein kinase
Function / homology
Function and homology information
response to nitrosative stress / negative regulation of catalytic activity / negative regulation of fatty acid biosynthetic process / positive regulation of catalytic activity / : / protein autophosphorylation / membrane => GO:0016020 / non-specific serine/threonine protein kinase / protein kinase activity / protein phosphorylation ...response to nitrosative stress / negative regulation of catalytic activity / negative regulation of fatty acid biosynthetic process / positive regulation of catalytic activity / : / protein autophosphorylation / membrane => GO:0016020 / non-specific serine/threonine protein kinase / protein kinase activity / protein phosphorylation / protein serine/threonine kinase activity / extracellular region / ATP binding / plasma membrane Similarity search - Function
Thioredoxin / Thioredoxin-like fold / Thioredoxin-like superfamily / Transferase(Phosphotransferase) domain 1 / Transferase(Phosphotransferase); domain 1 / Phosphorylase Kinase; domain 1 / Phosphorylase Kinase; domain 1 / Protein kinase domain / Serine/Threonine protein kinases, catalytic domain / Protein kinase, ATP binding site ...Thioredoxin / Thioredoxin-like fold / Thioredoxin-like superfamily / Transferase(Phosphotransferase) domain 1 / Transferase(Phosphotransferase); domain 1 / Phosphorylase Kinase; domain 1 / Phosphorylase Kinase; domain 1 / Protein kinase domain / Serine/Threonine protein kinases, catalytic domain / Protein kinase, ATP binding site / Protein kinases ATP-binding region signature. / Protein kinase domain profile. / Protein kinase domain / Protein kinase-like domain superfamily / 2-Layer Sandwich / Orthogonal Bundle / Mainly Alpha / Alpha Beta Similarity search - Domain/homology
Monochromator: SI 111 / Protocol: SINGLE WAVELENGTH / Scattering type: x-ray
Radiation wavelength
Wavelength: 0.9796 Å / Relative weight: 1
Reflection
Redundancy: 5.8 % / Av σ(I) over netI: 12.3 / Number: 106124 / Rmerge(I) obs: 0.088 / Χ2: 2.82 / D res high: 2.8 Å / D res low: 50 Å / Num. obs: 18268 / % possible obs: 99.9
Diffraction reflection shell
Highest resolution (Å)
Lowest resolution (Å)
% possible obs (%)
ID
Rmerge(I) obs
Chi squared
Redundancy
6.03
50
99.2
1
0.074
13.28
5.6
4.79
6.03
100
1
0.07
4.678
5.8
4.18
4.79
100
1
0.061
2.641
5.9
3.8
4.18
100
1
0.071
1.878
5.8
3.53
3.8
100
1
0.09
1.486
5.8
3.32
3.53
100
1
0.133
1.107
5.8
3.15
3.32
100
1
0.197
0.954
5.8
3.02
3.15
100
1
0.289
0.816
5.8
2.9
3.02
100
1
0.408
0.795
5.8
2.8
2.9
100
1
0.615
0.755
5.8
Reflection
Resolution: 2.8→50 Å / Num. obs: 18268 / % possible obs: 99.9 % / Redundancy: 5.8 % / Rmerge(I) obs: 0.088 / Χ2: 2.816 / Net I/σ(I): 12.3
Reflection shell
Resolution (Å)
Redundancy (%)
Rmerge(I) obs
Num. unique all
Χ2
Diffraction-ID
% possible all
2.8-2.9
5.8
0.615
1819
0.755
1
100
2.9-3.02
5.8
0.408
1807
0.795
1
100
3.02-3.15
5.8
0.289
1830
0.816
1
100
3.15-3.32
5.8
0.197
1819
0.954
1
100
3.32-3.53
5.8
0.133
1827
1.107
1
100
3.53-3.8
5.8
0.09
1827
1.486
1
100
3.8-4.18
5.8
0.071
1822
1.878
1
100
4.18-4.79
5.9
0.061
1838
2.641
1
100
4.79-6.03
5.8
0.07
1830
4.678
1
100
6.03-50
5.6
0.074
1849
13.28
1
99.2
-
Phasing
Phasing
Method: SAD
Phasing MAD
D res high: 2.8 Å / D res low: 50 Å / FOM : 0.34 / Reflection: 17500
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