+Open data
-Basic information
Entry | Database: PDB / ID: 1wp8 | ||||||
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Title | crystal structure of Hendra Virus fusion core | ||||||
Components | Fusion glycoprotein F0,Fusion glycoprotein F0 | ||||||
Keywords | VIRAL PROTEIN / Hendra Virus / Fusion Core / heptad repeat | ||||||
Function / homology | Function and homology information host cell surface / symbiont entry into host cell / fusion of virus membrane with host plasma membrane / viral envelope / host cell plasma membrane / virion membrane / membrane Similarity search - Function | ||||||
Biological species | Hendra virus | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MAD / Resolution: 2.2 Å | ||||||
Authors | Xu, Y. / Liu, Y. / Lou, Z. / Su, N. / Bai, Z. / Gao, G.F. / Rao, Z. | ||||||
Citation | Journal: FEBS J. / Year: 2006 Title: Crystal structures of Nipah and Hendra virus fusion core proteins Authors: Lou, Z. / Xu, Y. / Xiang, K. / Su, N. / Qin, L. / Li, X. / Gao, G.F. / Bartlam, M. / Rao, Z. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1wp8.cif.gz | 50.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1wp8.ent.gz | 37.5 KB | Display | PDB format |
PDBx/mmJSON format | 1wp8.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/wp/1wp8 ftp://data.pdbj.org/pub/pdb/validation_reports/wp/1wp8 | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 9748.781 Da / Num. of mol.: 3 / Fragment: UNP residues 137-178,UNP residues 453-485 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Hendra virus / Genus: Henipavirus / Plasmid: pET 22b / Species (production host): Escherichia coli / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21(DE3) / References: UniProt: O89342 #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 1.7 Å3/Da / Density % sol: 29.62 % |
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Crystal grow | Temperature: 291 K / Method: vapor diffusion, hanging drop / pH: 6.5 Details: PEG4000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K |
-Data collection
Diffraction source | Source: SYNCHROTRON / Site: BSRF / Beamline: 3W1A / Wavelength: 0.9799, 0.9801, 0.950 | ||||||||||||
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Detector | Date: Nov 12, 2003 | ||||||||||||
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | ||||||||||||
Radiation wavelength |
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Reflection | Resolution: 2.2→35 Å / Num. all: 9875 / Num. obs: 9875 | ||||||||||||
Reflection shell | Resolution: 2.2→2.25 Å |
-Processing
Software |
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Refinement | Method to determine structure: MAD / Resolution: 2.2→35 Å
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Refinement step | Cycle: LAST / Resolution: 2.2→35 Å
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