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- PDB-1wn9: Crystal structure of the hypothetical protein TT1805 from Thermus... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1wn9 | ||||||
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Title | Crystal structure of the hypothetical protein TT1805 from Thermus thermophillus HB8 | ||||||
![]() | the hypothetical protein (TT1805) | ||||||
![]() | STRUCTURAL GENOMICS / UNKNOWN FUNCTION / Thermus thermophillus / RIKEN Structural Genomics/Proteomics Initiative / RSGI | ||||||
Function / homology | TTHA1528-like / hypothetical protein tt1805 / Domain of unknown function DUF3197 / TTHA1528-like superfamily / Protein of unknown function (DUF3197) / 3-Layer(aba) Sandwich / Alpha Beta / ACETIC ACID / Uncharacterized protein![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Pioszak, A.A. / Kishishita, S. / Shirouzu, M. / Kuramitsu, S. / Yokoyama, S. / RIKEN Structural Genomics/Proteomics Initiative (RSGI) | ||||||
![]() | ![]() Title: Crystal structure of the hypothetical protein TT1805 from Thermus thermophillus HB8 Authors: Pioszak, A.A. / Kishishita, S. / Shirouzu, M. / Kuramitsu, S. / Yokoyama, S. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 35.2 KB | Display | ![]() |
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PDB format | ![]() | 27.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 434.5 KB | Display | ![]() |
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Full document | ![]() | 436.2 KB | Display | |
Data in XML | ![]() | 8.4 KB | Display | |
Data in CIF | ![]() | 11 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 14389.194 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() | ||
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#2: Chemical | #3: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.44 Å3/Da / Density % sol: 49.21 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 6.5 Details: 14% PEG 8000, 0.1M NaCacodylate, 170mM ZnAcetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
-Data collection
Diffraction | Mean temperature: 93 K | ||||||||||||
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Diffraction source | Source: ![]() ![]() ![]() | ||||||||||||
Detector | Type: RIGAKU JUPITER 210 / Detector: CCD / Date: May 24, 2004 | ||||||||||||
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | ||||||||||||
Radiation wavelength |
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Reflection | Resolution: 1.58→34.12 Å / Num. obs: 34154 / % possible obs: 99.1 % / Observed criterion σ(I): -3 / Redundancy: 3.54722 % / Biso Wilson estimate: 18.6 Å2 / Rsym value: 0.063 / Net I/σ(I): 14.0589 | ||||||||||||
Reflection shell | Resolution: 1.58→1.64 Å / Mean I/σ(I) obs: 7.37896 / Rsym value: 0.15 / % possible all: 95.6 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 53.9871 Å2 / ksol: 0.396514 e/Å3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 19.1 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 1.58→34.12 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.58→1.64 Å / Rfactor Rfree error: 0.024 / Total num. of bins used: 10
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Xplor file |
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