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- PDB-1wna: Crystal structure of the hypothetical protein TT1805 from Thermus... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1wna | ||||||
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Title | Crystal structure of the hypothetical protein TT1805 from Thermus thermophillus HB8 | ||||||
![]() | the hypothetical protein (TT1805) | ||||||
![]() | STRUCTURAL GENOMICS / UNKNOWN FUNCTION / Thermus thermophillus / RIKEN Structural Genomics/Proteomics Initiative / RSGI | ||||||
Function / homology | TTHA1528-like / hypothetical protein tt1805 / Domain of unknown function DUF3197 / TTHA1528-like superfamily / Protein of unknown function (DUF3197) / 3-Layer(aba) Sandwich / Alpha Beta / Uncharacterized protein![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Pioszak, A.A. / Kishishita, S. / Shirouzu, M. / Kuramitsu, S. / Yokoyama, S. / RIKEN Structural Genomics/Proteomics Initiative (RSGI) | ||||||
![]() | ![]() Title: Crystal structure of the hypothetical protein TT1805 from Thermus thermophillus HB8 Authors: Pioszak, A.A. / Kishishita, S. / Shirouzu, M. / Kuramitsu, S. / Yokoyama, S. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 34.7 KB | Display | ![]() |
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PDB format | ![]() | 27 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 415.3 KB | Display | ![]() |
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Full document | ![]() | 417.8 KB | Display | |
Data in XML | ![]() | 8.4 KB | Display | |
Data in CIF | ![]() | 11.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 14389.194 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.6 Å3/Da / Density % sol: 52.24 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 5 Details: 13% PEG 8000, 20% glycerol, 40mM Potassium dihydrogen phosphate, pH 5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
-Data collection
Diffraction | Mean temperature: 93 K | ||||||||||||
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Diffraction source | Source: ![]() ![]() ![]() | ||||||||||||
Detector | Type: RIGAKU JUPITER 210 / Detector: CCD / Date: May 24, 2004 | ||||||||||||
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | ||||||||||||
Radiation wavelength |
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Reflection | Resolution: 1.58→37.12 Å / Num. obs: 36267 / % possible obs: 98.3 % / Observed criterion σ(I): -3 / Redundancy: 4.61446 % / Biso Wilson estimate: 21.6 Å2 / Rsym value: 0.071 / Net I/σ(I): 17.5556 | ||||||||||||
Reflection shell | Resolution: 1.58→1.64 Å / Mean I/σ(I) obs: 4.52941 / Rsym value: 0.234 / % possible all: 85.9 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 48.0179 Å2 / ksol: 0.361438 e/Å3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 27.2 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 1.58→37.12 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.58→1.64 Å / Rfactor Rfree error: 0.022 / Total num. of bins used: 10
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Xplor file |
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