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Yorodumi- PDB-1tvq: Crystal Structure of Apo Chicken Liver Basic Fatty Acid Binding P... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1tvq | ||||||
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Title | Crystal Structure of Apo Chicken Liver Basic Fatty Acid Binding Protein (or Bile Acid Binding Protein) | ||||||
Components | Fatty acid-binding protein | ||||||
Keywords | LIPID BINDING PROTEIN / Lb-FABP / FABP / BABP / INTRACELLULAR BILE ACID-BINDING PROTEIN | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Gallus gallus (chicken) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MIR / Resolution: 2 Å | ||||||
Authors | Nichesola, D. / Perduca, M. / Capaldi, S. / Carrizo, M.E. / Righetti, P.G. / Monaco, H.L. | ||||||
Citation | Journal: Biochemistry / Year: 2004 Title: Crystal structure of chicken liver basic Fatty Acid-binding protein complexed with cholic acid Authors: Nichesola, D. / Perduca, M. / Capaldi, S. / Carrizo, M.E. / Righetti, P.G. / Monaco, H.L. #1: Journal: MOL.CELL.BIOCHEM. / Year: 1990 Title: Crystal Structure of Chicken Liver Basic Fatty Acid-Binding Protein at 2.7 A Resolution Authors: Scapin, G. / Spadon, P. / Mammi, M. / Zanotti, G. / Monaco, H.L. #2: Journal: FEBS Lett. / Year: 1988 Title: Chicken liver basic fatty acid-binding protein (pI = 9.0). Purification, crystallization and preliminary X-ray data Authors: Scapin, G. / Spadon, P. / Pengo, L. / Mammi, M. / Zanotti, G. / Monaco, H.L. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1tvq.cif.gz | 38.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1tvq.ent.gz | 26.6 KB | Display | PDB format |
PDBx/mmJSON format | 1tvq.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1tvq_validation.pdf.gz | 419.3 KB | Display | wwPDB validaton report |
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Full document | 1tvq_full_validation.pdf.gz | 421.9 KB | Display | |
Data in XML | 1tvq_validation.xml.gz | 8.4 KB | Display | |
Data in CIF | 1tvq_validation.cif.gz | 11.2 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/tv/1tvq ftp://data.pdbj.org/pub/pdb/validation_reports/tv/1tvq | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 14100.177 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Gallus gallus (chicken) / Tissue: Liver / References: UniProt: P80226 |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.8 Å3/Da / Density % sol: 55.8 % |
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Crystal grow | Temperature: 298 K / Method: microgravity / pH: 7.5 Details: IMIDAZOLE, PEG 6000, pH 7.5, MICROGRAVITY, temperature 298.0K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: ELETTRA / Beamline: 5.2R / Wavelength: 1 Å |
Detector | Type: MARRESEARCH / Detector: CCD / Date: Sep 12, 2001 / Details: Three-segment Pt-coated toroidal |
Radiation | Monochromator: Double Crystal (Si111, Si220) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2→30 Å / Num. all: 60486 / Num. obs: 60486 / % possible obs: 99.3 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 5.5 % / Biso Wilson estimate: 22.84 Å2 / Rsym value: 0.047 |
Reflection shell | Resolution: 2→2.11 Å / Rsym value: 0.047 / % possible all: 100 |
-Processing
Software |
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Refinement | Method to determine structure: MIR / Resolution: 2→29.54 Å / Rfactor Rfree error: 0.008 / Data cutoff high absF: 8119382.96 / Data cutoff low absF: 0 / Cross valid method: THROUGHOUT / σ(F): 0 / Stereochemistry target values: Engh & Huber
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Displacement parameters | Biso mean: 24.81 Å2 | |||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2→29.54 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2→2.07 Å /
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