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Yorodumi- PDB-1tfb: NMR STUDIES OF HUMAN GENERAL TRANSCRIPTION FACTOR TFIIB: DYNAMICS... -
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-Basic information
Entry | Database: PDB / ID: 1tfb | ||||||
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Title | NMR STUDIES OF HUMAN GENERAL TRANSCRIPTION FACTOR TFIIB: DYNAMICS AND INTERACTION WITH VP16 ACTIVATION DOMAIN, 20 STRUCTURES | ||||||
Components | TFIIB | ||||||
Keywords | TRANSCRIPTION FACTOR / HUMAN GENERAL TRANSCRIPTION FACTOR TFIIB / C-TERMINAL CORE DOMAIN / CYCLIN BOX FOLD | ||||||
Function / homology | Function and homology information positive regulation of core promoter binding / meiotic sister chromatid cohesion / transcriptional start site selection at RNA polymerase II promoter / RNA polymerase II core complex assembly / germinal vesicle / transcription preinitiation complex / nuclear thyroid hormone receptor binding / protein acetylation / HIV Transcription Initiation / RNA Polymerase II HIV Promoter Escape ...positive regulation of core promoter binding / meiotic sister chromatid cohesion / transcriptional start site selection at RNA polymerase II promoter / RNA polymerase II core complex assembly / germinal vesicle / transcription preinitiation complex / nuclear thyroid hormone receptor binding / protein acetylation / HIV Transcription Initiation / RNA Polymerase II HIV Promoter Escape / Transcription of the HIV genome / RNA Polymerase II Promoter Escape / RNA Polymerase II Transcription Pre-Initiation And Promoter Opening / RNA Polymerase II Transcription Initiation / RNA Polymerase II Transcription Initiation And Promoter Clearance / cell division site / RNA polymerase II complex binding / viral transcription / acetyltransferase activity / RNA polymerase II transcribes snRNA genes / transcription factor TFIID complex / RNA polymerase II general transcription initiation factor activity / RNA polymerase II core promoter sequence-specific DNA binding / spindle assembly / histone acetyltransferase activity / RNA polymerase II preinitiation complex assembly / histone acetyltransferase / RNA Polymerase II Pre-transcription Events / TBP-class protein binding / promoter-specific chromatin binding / protein-DNA complex / transcription initiation at RNA polymerase II promoter / kinetochore / RNA polymerase II transcription regulator complex / chromosome / DNA-binding transcription factor binding / transcription by RNA polymerase II / nuclear body / zinc ion binding / nucleoplasm / nucleus Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | SOLUTION NMR | ||||||
Authors | Bagby, S. / Ikura, M. | ||||||
Citation | Journal: Biochemistry / Year: 1998 Title: Human general transcription factor TFIIB: conformational variability and interaction with VP16 activation domain. Authors: Hayashi, F. / Ishima, R. / Liu, D. / Tong, K.I. / Kim, S. / Reinberg, D. / Bagby, S. / Ikura, M. #1: Journal: Nature / Year: 1995 Title: Crystal Structure of a TFIIB-TBP-TATA-Element Ternary Complex Authors: Nikolov, D.B. / Chen, H. / Halay, E.D. / Usheva, A.A. / Hisatake, K. / Lee, D.K. / Roeder, R.G. / Burley, S.K. #2: Journal: Cell(Cambridge,Mass.) / Year: 1995 Title: Solution Structure of the C-Terminal Core Domain of Human TFIIB: Similarity to Cyclin a and Interaction with TATA-Binding Protein Authors: Bagby, S. / Kim, S. / Maldonado, E. / Tong, K.I. / Reinberg, D. / Ikura, M. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1tfb.cif.gz | 1.2 MB | Display | PDBx/mmCIF format |
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PDB format | pdb1tfb.ent.gz | 1 MB | Display | PDB format |
PDBx/mmJSON format | 1tfb.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1tfb_validation.pdf.gz | 345 KB | Display | wwPDB validaton report |
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Full document | 1tfb_full_validation.pdf.gz | 739.7 KB | Display | |
Data in XML | 1tfb_validation.xml.gz | 152.1 KB | Display | |
Data in CIF | 1tfb_validation.cif.gz | 203.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/tf/1tfb ftp://data.pdbj.org/pub/pdb/validation_reports/tf/1tfb | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 23198.107 Da / Num. of mol.: 1 Fragment: CONSTRUCT COMPRISES RESIDUES 1 - 3 AND 112 - 316 OF FULL LENGTH HUMAN TFIIB Mutation: DEL(4 - 111) Source method: isolated from a genetically manipulated source Details: RESIDUES MET 1 AND ALA 2 ARE OMITTED FROM THE COORDINATES, AND SER 3 IS NUMBERED AS SER 111 Source: (gene. exp.) Homo sapiens (human) Description: FURTHER DETAILS CAN BE FOUND IN HA ET AL., GENES AND DEVELOPMENT 7 (1993) 1021 Cell line: BL21 / Gene: HUMAN TFIIB DELTA 4-111 / Plasmid: PET11A / Species (production host): Escherichia coli / Gene (production host): HUMAN TFIIB DELTA 4-111 / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21 (DE3) / References: UniProt: Q00403 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Crystal grow | *PLUS Method: other / Details: NMR |
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-Processing
Software |
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NMR software | Name: X-PLOR / Version: 3.1 / Developer: BRUNGER / Classification: refinement | ||||||||||||
NMR ensemble | Conformers submitted total number: 20 |