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データを開く
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基本情報
登録情報 | データベース: PDB / ID: 1qjb | |||||||||
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タイトル | 14-3-3 ZETA/PHOSPHOPEPTIDE COMPLEX (MODE 1) | |||||||||
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![]() | KINASE INHIBITOR/PEPTIDE / KINASE INHIBITOR-PEPTIDE COMPLEX / SIGNAL TRANSDUCTION | |||||||||
機能・相同性 | ![]() KSRP (KHSRP) binds and destabilizes mRNA / NOTCH4 Activation and Transmission of Signal to the Nucleus / Regulation of localization of FOXO transcription factors / Activation of BAD and translocation to mitochondria / protein localization => GO:0008104 / Golgi reassembly / synaptic target recognition / Rap1 signalling / TP53 Regulates Metabolic Genes / Interleukin-3, Interleukin-5 and GM-CSF signaling ...KSRP (KHSRP) binds and destabilizes mRNA / NOTCH4 Activation and Transmission of Signal to the Nucleus / Regulation of localization of FOXO transcription factors / Activation of BAD and translocation to mitochondria / protein localization => GO:0008104 / Golgi reassembly / synaptic target recognition / Rap1 signalling / TP53 Regulates Metabolic Genes / Interleukin-3, Interleukin-5 and GM-CSF signaling / respiratory system process / NOTCH4 Activation and Transmission of Signal to the Nucleus / regulation of synapse maturation / establishment of Golgi localization / tube formation / Rap1 signalling / negative regulation of protein localization to nucleus / KSRP (KHSRP) binds and destabilizes mRNA / GP1b-IX-V activation signalling / Regulation of localization of FOXO transcription factors / Interleukin-3, Interleukin-5 and GM-CSF signaling / host cell membrane / phosphoserine residue binding / Activation of BAD and translocation to mitochondria / protein targeting / SARS-CoV-2 targets host intracellular signalling and regulatory pathways / cellular response to glucose starvation / Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex / SARS-CoV-1 targets host intracellular signalling and regulatory pathways / RHO GTPases activate PKNs / negative regulation of TORC1 signaling / protein sequestering activity / ERK1 and ERK2 cascade / negative regulation of innate immune response / viral process / hippocampal mossy fiber to CA3 synapse / regulation of ERK1 and ERK2 cascade / Translocation of SLC2A4 (GLUT4) to the plasma membrane / Deactivation of the beta-catenin transactivating complex / TP53 Regulates Metabolic Genes / Negative regulation of NOTCH4 signaling / lung development / regulation of protein stability / melanosome / angiogenesis / DNA-binding transcription factor binding / vesicle / transmembrane transporter binding / membrane => GO:0016020 / blood microparticle / cadherin binding / protein domain specific binding / protein phosphorylation / focal adhesion / glutamatergic synapse / ubiquitin protein ligase binding / negative regulation of apoptotic process / protein kinase binding / negative regulation of transcription by RNA polymerase II / signal transduction / RNA binding / extracellular space / extracellular exosome / nucleoplasm / identical protein binding / nucleus / cytoplasm / cytosol 類似検索 - 分子機能 | |||||||||
生物種 | ![]() | |||||||||
手法 | ![]() ![]() ![]() | |||||||||
![]() | Rittinger, K. / Budman, J. / Xu, J. / Volinia, S. / Cantley, L.C. / Smerdon, S.J. / Gamblin, S.J. / Yaffe, M.B. | |||||||||
![]() | ![]() タイトル: Structural Analysis of 14-3-3 Phosphopeptide Complexes Identifies a Dual Role for the Nuclear Export Signal of 14-3-3 in Ligand Binding 著者: Rittinger, K. / Budman, J. / Xu, J. / Volinia, S. / Cantley, L.C. / Smerdon, S.J. / Gamblin, S.J. / Yaffe, M.B. | |||||||||
履歴 |
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構造の表示
構造ビューア | 分子: ![]() ![]() |
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ダウンロードとリンク
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ダウンロード
PDBx/mmCIF形式 | ![]() | 114.1 KB | 表示 | ![]() |
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PDB形式 | ![]() | 89.7 KB | 表示 | ![]() |
PDBx/mmJSON形式 | ![]() | ツリー表示 | ![]() | |
その他 | ![]() |
-検証レポート
文書・要旨 | ![]() | 389.3 KB | 表示 | ![]() |
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文書・詳細版 | ![]() | 409 KB | 表示 | |
XML形式データ | ![]() | 13.6 KB | 表示 | |
CIF形式データ | ![]() | 21.9 KB | 表示 | |
アーカイブディレクトリ | ![]() ![]() | HTTPS FTP |
-関連構造データ
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リンク
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集合体
登録構造単位 | ![]()
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単位格子 |
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要素
#1: タンパク質 | 分子量: 27777.092 Da / 分子数: 2 / 由来タイプ: 組換発現 / 由来: (組換発現) ![]() ![]() ![]() #2: タンパク質・ペプチド | 分子量: 969.935 Da / 分子数: 2 / 由来タイプ: 合成 / 由来: (合成) ![]() #3: 水 | ChemComp-HOH / | 配列の詳細 | CHAINS S AND Q ARE DERIVED FROM THE SEQUENCE, VMRSHSYPPT, FOUND IN MOUSE POLYOMAVIRUS (STRAIN 3) ...CHAINS S AND Q ARE DERIVED FROM THE SEQUENCE, VMRSHSYPPT | |
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-実験情報
-実験
実験 | 手法: ![]() |
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試料調製
結晶 | マシュー密度: 2.8 Å3/Da / 溶媒含有率: 56 % | ||||||||||||||||||||||||||||||
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結晶化 | pH: 6.2 詳細: COMPLEX WAS CRYSTALLIZED FROM 100 MM MES, PH 6.2, 20 MM MGCL2, 20% ISOPROPANOL AND 15% PEG 4000. IMPROVED CRYSTALS BY MICRO- AND MACROSEEDING INTO 100 MM MES, PH 6.2, 20 MM MGCL2, 15-17% ...詳細: COMPLEX WAS CRYSTALLIZED FROM 100 MM MES, PH 6.2, 20 MM MGCL2, 20% ISOPROPANOL AND 15% PEG 4000. IMPROVED CRYSTALS BY MICRO- AND MACROSEEDING INTO 100 MM MES, PH 6.2, 20 MM MGCL2, 15-17% ISOPROPANOL A 12% PEG 4000. | ||||||||||||||||||||||||||||||
結晶化 | *PLUS 温度: 4 ℃ / 手法: 蒸気拡散法, ハンギングドロップ法 / 詳細: used to seeding | ||||||||||||||||||||||||||||||
溶液の組成 | *PLUS
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-データ収集
回折 | 平均測定温度: 100 K |
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放射光源 | 由来: ![]() ![]() ![]() |
検出器 | タイプ: MARRESEARCH / 検出器: IMAGE PLATE / 詳細: MIRROR |
放射 | モノクロメーター: SINGLE CRYSTAL / プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray |
放射波長 | 波長: 1.488 Å / 相対比: 1 |
反射 | 解像度: 2→15 Å / Num. obs: 37059 / % possible obs: 83.5 % / Observed criterion σ(I): 2 / 冗長度: 2 % / Rmerge(I) obs: 0.059 / Net I/σ(I): 13.3 |
反射 シェル | 解像度: 2→2.09 Å / Rmerge(I) obs: 0.32 / Mean I/σ(I) obs: 2.1 / % possible all: 41.6 |
反射 シェル | *PLUS % possible obs: 41.6 % |
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解析
ソフトウェア |
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精密化 | 構造決定の手法: ![]() 開始モデル: 14-3-3 ZETA 解像度: 2→15 Å / 交差検証法: THROUGHOUT / σ(F): 0 詳細: THE C-TERMINAL RESIDUES FOR CHAINS A AND B WERE NOT SEEN IN THE DENSITY MAPS
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精密化ステップ | サイクル: LAST / 解像度: 2→15 Å
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拘束条件 |
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ソフトウェア | *PLUS 名称: REFMAC / 分類: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
精密化 | *PLUS Rfactor obs: 0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
溶媒の処理 | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
原子変位パラメータ | *PLUS |