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- PDB-1jzu: Cell transformation by the myc oncogene activates expression of a... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1jzu | ||||||
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Title | Cell transformation by the myc oncogene activates expression of a lipocalin: analysis of the gene (Q83) and solution structure of its protein product | ||||||
![]() | lipocalin Q83 | ||||||
![]() | LIPID BINDING PROTEIN / BETA BARREL / LIPOCALIN | ||||||
Function / homology | ![]() oleic acid binding / enterobactin binding / arachidonic acid binding / defense response to bacterium / innate immune response / extracellular region Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | SOLUTION NMR / ARIA, CNS automated refinement using also ambiguous NOE distance constraints; simulated annealing (torsion angle dynamics) | ||||||
![]() | Hartl, M. / Matt, T. / Schueler, W. / Siemeister, G. / Kontaxis, G. / Kloiber, K. / Konrat, R. / Bister, K. | ||||||
![]() | ![]() Title: Cell Transformation by the v-myc Oncogene Abrogates c-Myc/Max-mediated Suppression of a C/EBPbeta-dependent Lipocalin Gene. Authors: Hartl, M. / Matt, T. / Schueler, W. / Siemeister, G. / Kontaxis, G. / Kloiber, K. / Konrat, R. / Bister, K. #1: ![]() Title: Sequence-Specific Resonance Assignments of Q83, a Lipocalin Highly Expressed in v-myc-Transformed Avian Fibroblasts Authors: Kontaxis, G. / Matt, T. / Schueler, W. / Kraeutler, B. / Bister, K. / Konrat, R. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 978.3 KB | Display | ![]() |
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PDB format | ![]() | 846.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 346.8 KB | Display | ![]() |
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Full document | ![]() | 628.4 KB | Display | |
Data in XML | ![]() | 97.8 KB | Display | |
Data in CIF | ![]() | 127.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein | Mass: 18104.734 Da / Num. of mol.: 1 / Mutation: A1M Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Contents: 3mM lipocalin Q83 U-15N,13C; 20 mM potassium phosphate; 50 mM potassium chloride; 0.5mM dithiothreitol; 90% H2O, 10% D2O Solvent system: 90% H2O/10% D2O |
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Sample conditions | Ionic strength: 20mM potassium phosphate; 50mM potassium chloride; 0.5mM dithiothreitol pH: 6.4 / Pressure: ambient / Temperature: 299 K |
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M |
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Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Varian UNITYPLUS / Manufacturer: Varian / Model: UNITYPLUS / Field strength: 500 MHz |
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Processing
NMR software |
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Refinement | Method: ARIA, CNS automated refinement using also ambiguous NOE distance constraints; simulated annealing (torsion angle dynamics) Software ordinal: 1 | ||||||||||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations,structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |