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- PDB-1hfs: CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN FIBROBLAST STR... -
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Basic information
Entry | Database: PDB / ID: 1hfs | |||||||||
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Title | CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN FIBROBLAST STROMELYSIN-1 INHIBITED WITH THE N-CARBOXY-ALKYL INHIBITOR L-764,004 | |||||||||
![]() | STROMELYSIN-1 | |||||||||
![]() | HYDROLASE / METALLOPROTEASE / MATRIX METALLOPROTEASE-3 / PROTEOGLYCANASE | |||||||||
Function / homology | ![]() stromelysin 1 / cellular response to UV-A / regulation of neuroinflammatory response / Assembly of collagen fibrils and other multimeric structures / Activation of Matrix Metalloproteinases / response to amyloid-beta / Collagen degradation / collagen catabolic process / extracellular matrix disassembly / cellular response to nitric oxide ...stromelysin 1 / cellular response to UV-A / regulation of neuroinflammatory response / Assembly of collagen fibrils and other multimeric structures / Activation of Matrix Metalloproteinases / response to amyloid-beta / Collagen degradation / collagen catabolic process / extracellular matrix disassembly / cellular response to nitric oxide / negative regulation of reactive oxygen species metabolic process / negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction / regulation of cell migration / EGFR Transactivation by Gastrin / Degradation of the extracellular matrix / extracellular matrix organization / extracellular matrix / cellular response to amino acid stimulus / protein catabolic process / positive regulation of protein-containing complex assembly / metalloendopeptidase activity / cellular response to reactive oxygen species / metallopeptidase activity / peptidase activity / cellular response to lipopolysaccharide / Interleukin-4 and Interleukin-13 signaling / endopeptidase activity / Extra-nuclear estrogen signaling / serine-type endopeptidase activity / innate immune response / mitochondrion / proteolysis / extracellular space / zinc ion binding / extracellular region / nucleus / cytosol Similarity search - Function | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() | |||||||||
![]() | Becker, J.W. | |||||||||
![]() | ![]() Title: Inhibition of stromelysin-1 (MMP-3) by P1'-biphenylylethyl carboxyalkyl dipeptides. Authors: Esser, C.K. / Bugianesi, R.L. / Caldwell, C.G. / Chapman, K.T. / Durette, P.L. / Girotra, N.N. / Kopka, I.E. / Lanza, T.J. / Levorse, D.A. / MacCoss, M. / Owens, K.A. / Ponpipom, M.M. / ...Authors: Esser, C.K. / Bugianesi, R.L. / Caldwell, C.G. / Chapman, K.T. / Durette, P.L. / Girotra, N.N. / Kopka, I.E. / Lanza, T.J. / Levorse, D.A. / MacCoss, M. / Owens, K.A. / Ponpipom, M.M. / Simeone, J.P. / Harrison, R.K. / Niedzwiecki, L. / Becker, J.W. / Marcy, A.I. / Axel, M.G. / Christen, A.J. / McDonnell, J. / Moore, V.L. / Olszewski, J.M. / Saphos, C. / Visco, D.M. / Shen, F. / Colletti, A. / Krieter, P.A. / Hagmann, W.K. #1: ![]() Title: Comparison of the Structure of Human Recombinant Short Form Stromelysin by Multidimensional Heteronuclear NMR and X-Ray Crystallography Authors: Gooley, P.R. / O'Connell, J.F. / Marcy, A.I. / Cuca, G.C. / Axel, M.G. / Caldwell, C.G. / Hagmann, W.K. / Becker, J.W. #2: ![]() Title: Stromelysin-1: Three-Dimensional Structure of the Inhibited Catalytic Domain and of the C-Truncated Proenzyme Authors: Becker, J.W. / Marcy, A.I. / Rokosz, L.L. / Axel, M.G. / Burbaum, J.J. / Fitzgerald, P.M. / Cameron, P.M. / Esser, C.K. / Hagmann, W.K. / Hermes, J.D. / Springer, J.P. #3: ![]() Title: The NMR Structure of the Inhibited Catalytic Domain of Human Stromelysin-1 Authors: Gooley, P.R. / O'Connell, J.F. / Marcy, A.I. / Cuca, G.C. / Salowe, S.P. / Bush, B.L. / Hermes, J.D. / Esser, C.K. / Hagmann, W.K. / Springer, J.P. / Johnson, B.A. #4: ![]() Title: Inhibition of Matrix Metalloproteinases by N-Carboxyalkyl Peptides Authors: Chapman, K.T. / Kopka, I.E. / Durette, P.L. / Esser, C.K. / Lanza, T.J. / Izquierdo-Martin, M. / Niedzwiecki, L. / Chang, B. / Harrison, R.K. / Kuo, D.W. / Lin, T.Y. / Stein, R.L. / Hagmann, W.K. #5: ![]() Title: Human Fibroblast Stromelysin Catalytic Domain: Expression, Purification, and Characterization of a C-Terminally Truncated Form Authors: Marcy, A.I. / Eiberger, L.L. / Harrison, R. / Chan, H.K. / Hutchinson, N.I. / Hagmann, W.K. / Cameron, P.M. / Boulton, D.A. / Hermes, J.D. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 52.5 KB | Display | ![]() |
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PDB format | ![]() | 36.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 702.5 KB | Display | ![]() |
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Full document | ![]() | 702.8 KB | Display | |
Data in XML | ![]() | 10.1 KB | Display | |
Data in CIF | ![]() | 13.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 17945.922 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() | ||||||
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#2: Chemical | #3: Chemical | #4: Chemical | ChemComp-L04 / | #5: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.76 Å3/Da / Density % sol: 53 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 6.5 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction source | Wavelength: 1.5418 |
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Detector | Type: RIGAKU / Detector: IMAGE PLATE / Date: Aug 29, 1994 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Num. obs: 21587 / % possible obs: 97 % / Observed criterion σ(I): 0 / Redundancy: 3.17 % / Biso Wilson estimate: 19.5 Å2 / Rmerge(I) obs: 0.0338 |
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Processing
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Refinement | Resolution: 1.7→20 Å / Rfactor Rfree error: 0.007 / Data cutoff high absF: 10000000 / Data cutoff low absF: 0.001 / Isotropic thermal model: RESTRAINED / Cross valid method: THROUGHOUT / σ(F): 2 / Details: BULK SOLVENT MODEL USED
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Displacement parameters | Biso mean: 21.2 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 1.7→20 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.7→1.73 Å / Rfactor Rfree error: 0.049 / Total num. of bins used: 20
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Xplor file |
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Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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