|Entry||Database: SASBDB / ID: SASDCR7|
TET12(1.10)SN-c6 (protein), synthetic construct
, 2017 Oct 16
|Contact author||Jana Aupic (National Institute of Chemistry, Slovenia)|
Downloads & links
Type: atomic / Software: (9.16) / Radius of dummy atoms: 1.90 A
Search similar-shape structures of this assembly by Omokage search (details)
|Sample||Name: TET12(1.10)SN-c6 / Specimen concentration: 0.90-3.60|
|Buffer||Name: 20 mM Tris 150 mM NaCl 10% glycerol / pH: 7.5|
|Entity #802||Type: protein / Description: TET12(1.10)SN-c6 / Formula weight: 54.345 / Number of molecules: 1 / Source: synthetic construct / References: UniProt: |
MLEEELKQLE EELQAIEEQL AQLQWKAQAR KEKLAQLKEK LGKGDGSPED EIQQLEEEIS QLEQKNSELK EKNQELKYGK GDGDIEQELE RAKESIRRLE QEVNQERSRM QYLQTLLEKG KGDGQLEDKV EELLSKNYHL ENEVERLKKL VGGKGDGLEE ELKQLEEELQ AIEEQLAQLQ WKAQARKEKL AQLKEKLGKG DGSPEDEIQQ LEEKNSQLKQ EISQLEEKNQ ELKYGDGKGQ LEDKVEELLS KNYHLENEVE RLKKLVGGDG KGSPEDKISQ LKEKIQQLKQ ENQQLEEENS QLEYGDGKGS PEDENSQLEE KISQLKQKNS ELKEEIQQLE YGDGKGSPED KISELKEENQ QLEQKIQQLK EENSQLEYGK GDGDIEQELE RAKESIRRLE QEVNQERSRM QYLQTLLEKG KGDGSPEDKN SELKEEIQQL EEENQQLEEK ISELKYLEHH HHHHHH
|Beam||Instrument name: PETRA III P12 / Instrument city: Hamburg / Instrument country: Germany / Shape: Point / Type of source: X-ray synchrotron / Radiation wavelength: 0.124 / Dist spec to detc: 2|
|Scan||Title: TET12(1.10)SN-c6 / Measurement date: Jun 10, 2016 / Storage temperature: 1 / Cell temperature: 2 / Exposure time: 0.045 / Number of frames: 20 / Unit: 1/nm / Qmin: 0.2035 / Qmax: 6.7156|
|Distance distribution function P(R)||Software p of R: GNOM 5.0 / Number of points: 356 / Qmin: 0.208986 / Qmax: 2.14352 / P of R point min: 1 / P of R point max: 356 / Rmin: 0 / Rmax: 11.5|
|Result||SASBDB code: SASDCR7 / Experimental MW: 42 / MW standard: 42 / MW standard error: 4 / MW Porod: 84 / I0 from PR: 5596 / I0 from PR error: 21 / I0 from Guinier: 5617 / I0 from Guinier error: 72 / Rg from PR: 3.57 / Rg from PR error: 0.01 / Rg from Guinier: 3.56 / Rg from Guinier error: 0.05 / D max: 11.5 / Porod volume: 145 / Guinier point min: 14 / Guinier point max: 30 / Type of curve: single_conc / Dmax error: 2|
-Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017
Three pioneers of this field were awarded Nobel Prize in Chemistry 2017
- Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
- Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
- Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.
External links: The 2017 Nobel Prize in Chemistry - Press Release
-Jul 12, 2017. Major update of PDB
Major update of PDB
- wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
- In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.
+Jun 16, 2017. Omokage search with filter
Omokage search with filter
- Result of Omokage search can be filtered by keywords and the database types
Related info.: Omokage search
+Sep 15, 2016. EM Navigator & Yorodumi renewed
EM Navigator & Yorodumi renewed
- New versions of EM Navigator and Yorodumi started
Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)
+Aug 31, 2016. New EM Navigator & Yorodumi
New EM Navigator & Yorodumi
- In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
- Current version will continue as 'legacy version' for some time.
Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)
Thousand views of thousand structures
- Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
- All the functionalities will be ported from the levgacy version.
- This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
Related info.: Yorodumi (legacy version) / EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Yorodumi Papers / Jmol/JSmol / Changes in new EM Navigator and Yorodumi