+Open data
-Basic information
Entry | Database: PDB / ID: 6b4w | |||||||||
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Title | TTK in Complex with Inhibitor | |||||||||
Components | Dual specificity protein kinase TTK | |||||||||
Keywords | SIGNALING PROTEIN / Protein kinase | |||||||||
Function / homology | Function and homology information protein localization to meiotic spindle midzone / meiotic spindle assembly checkpoint signaling / kinetochore binding / female meiosis chromosome segregation / protein localization to kinetochore / dual-specificity kinase / spindle organization / mitotic spindle assembly checkpoint signaling / protein serine/threonine/tyrosine kinase activity / mitotic spindle organization ...protein localization to meiotic spindle midzone / meiotic spindle assembly checkpoint signaling / kinetochore binding / female meiosis chromosome segregation / protein localization to kinetochore / dual-specificity kinase / spindle organization / mitotic spindle assembly checkpoint signaling / protein serine/threonine/tyrosine kinase activity / mitotic spindle organization / chromosome segregation / kinetochore / spindle / protein tyrosine kinase activity / phosphorylation / protein serine kinase activity / protein serine/threonine kinase activity / positive regulation of cell population proliferation / ATP binding / membrane / identical protein binding / nucleus / cytoplasm Similarity search - Function | |||||||||
Biological species | Homo sapiens (human) | |||||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / Resolution: 2.9 Å | |||||||||
Authors | Delker, S. / Chamberlain, P.P. | |||||||||
Citation | Journal: J. Med. Chem. / Year: 2017 Title: The Discovery of a Dual TTK Protein Kinase/CDC2-Like Kinase (CLK2) Inhibitor for the Treatment of Triple Negative Breast Cancer Initiated from a Phenotypic Screen. Authors: Riggs, J.R. / Nagy, M. / Elsner, J. / Erdman, P. / Cashion, D. / Robinson, D. / Harris, R. / Huang, D. / Tehrani, L. / Deyanat-Yazdi, G. / Narla, R.K. / Peng, X. / Tran, T. / Barnes, L. / ...Authors: Riggs, J.R. / Nagy, M. / Elsner, J. / Erdman, P. / Cashion, D. / Robinson, D. / Harris, R. / Huang, D. / Tehrani, L. / Deyanat-Yazdi, G. / Narla, R.K. / Peng, X. / Tran, T. / Barnes, L. / Miller, T. / Katz, J. / Tang, Y. / Chen, M. / Moghaddam, M.F. / Bahmanyar, S. / Pagarigan, B. / Delker, S. / LeBrun, L. / Chamberlain, P.P. / Calabrese, A. / Canan, S.S. / Leftheris, K. / Zhu, D. / Boylan, J.F. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6b4w.cif.gz | 69 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6b4w.ent.gz | 49.1 KB | Display | PDB format |
PDBx/mmJSON format | 6b4w.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/b4/6b4w ftp://data.pdbj.org/pub/pdb/validation_reports/b4/6b4w | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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-Components
#1: Protein | Mass: 34872.914 Da / Num. of mol.: 1 / Fragment: UNP residues 515-795 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: TTK, MPS1, MPS1L1 / Production host: Escherichia coli (E. coli) / References: UniProt: P33981, dual-specificity kinase |
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#2: Chemical | ChemComp-CQ7 / |
#3: Chemical | ChemComp-CAC / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 3.21 Å3/Da / Density % sol: 61.64 % |
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Crystal grow | Temperature: 277 K / Method: vapor diffusion, sitting drop / pH: 7 Details: 100mM Sodium Cacodylate, 200mM Potassium Thiocyanate, 15% PEG 4K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: CLSI / Beamline: 08ID-1 / Wavelength: 0.9795 Å |
Detector | Type: RAYONIX MX-300 / Detector: CCD / Date: Feb 7, 2015 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9795 Å / Relative weight: 1 |
Reflection | Resolution: 2.9→50.01 Å / Num. obs: 10272 / % possible obs: 99.9 % / Redundancy: 5.2 % / Net I/σ(I): 14 |
-Processing
Software |
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Refinement | Resolution: 2.9→50.01 Å / Cor.coef. Fo:Fc: 0.94 / Cor.coef. Fo:Fc free: 0.892 / SU B: 14.587 / SU ML: 0.275 / Cross valid method: THROUGHOUT / ESU R: 0.724 / ESU R Free: 0.348 / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 60.947 Å2
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Refinement step | Cycle: 1 / Resolution: 2.9→50.01 Å
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Refine LS restraints |
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