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- EMDB-6934: Ribosome Structure bound to ABC-F protein. -

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Basic information

Entry
Database: EMDB / ID: EMD-6934
TitleRibosome Structure bound to ABC-F protein.
Map dataNone
Sample
  • Complex: Bacterial ribosome in complex with MsrE
    • RNA: x 5 types
    • Protein or peptide: x 50 types
  • Protein or peptide: x 1 types
  • Ligand: x 2 types
Function / homology
Function and homology information


large ribosomal subunit rRNA binding / regulation of translation / large ribosomal subunit / 5S rRNA binding / ribosomal large subunit assembly / small ribosomal subunit / transferase activity / tRNA binding / ribosome / rRNA binding ...large ribosomal subunit rRNA binding / regulation of translation / large ribosomal subunit / 5S rRNA binding / ribosomal large subunit assembly / small ribosomal subunit / transferase activity / tRNA binding / ribosome / rRNA binding / structural constituent of ribosome / translation / ribonucleoprotein complex / mRNA binding / zinc ion binding / ATP binding / metal ion binding / cytoplasm
Similarity search - Function
ABC-transporter extension domain / ABC transporter / Ribosomal protein L1, bacterial-type / 30S ribosomal protein Thx / 30S ribosomal protein Thx / 30S ribosomal protein / Ribosomal protein L25, long-form / Ribosomal protein L25, beta domain / Ribosomal protein L25, C-terminal / Ribosomal protein TL5, C-terminal domain ...ABC-transporter extension domain / ABC transporter / Ribosomal protein L1, bacterial-type / 30S ribosomal protein Thx / 30S ribosomal protein Thx / 30S ribosomal protein / Ribosomal protein L25, long-form / Ribosomal protein L25, beta domain / Ribosomal protein L25, C-terminal / Ribosomal protein TL5, C-terminal domain / Ribosomal protein L10 / : / Ribosomal protein S14, type Z / Ribosomal protein L1, conserved site / Ribosomal protein L1 signature. / Ribosomal protein L1 / Ribosomal protein L1, 3-layer alpha/beta-sandwich / Ribosomal protein L11, bacterial-type / Ribosomal protein L1-like / Ribosomal protein L1/ribosomal biogenesis protein / Ribosomal protein L1p/L10e family / Ribosomal protein L31 type A / Ribosomal protein L31 signature. / Ribosomal protein L31 / Ribosomal protein L31 superfamily / Ribosomal protein L31 / Ribosomal protein L11, conserved site / Ribosomal protein L10-like domain superfamily / Ribosomal protein L11 signature. / Ribosomal protein L10 / Ribosomal protein L10P / Ribosomal L25p family / Ribosomal protein L25 / Ribosomal protein L11, N-terminal / Ribosomal protein L11, N-terminal domain / Ribosomal protein L11/L12 / Ribosomal protein L11, C-terminal / Ribosomal protein L11, C-terminal domain superfamily / Ribosomal protein L11/L12, N-terminal domain superfamily / Ribosomal protein L11, RNA binding domain / Ribosomal protein L11/L12 / Ribosomal protein L36 signature. / Ribosomal protein L25/Gln-tRNA synthetase, N-terminal / Ribosomal protein L32p, bacterial type / Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily / Ribosomal protein L35, conserved site / Ribosomal protein L35 signature. / Ribosomal protein L33, conserved site / Ribosomal protein L33 signature. / Ribosomal protein L35, non-mitochondrial / Ribosomal protein L5, bacterial-type / Ribosomal protein L6, bacterial-type / Ribosomal protein L18, bacterial-type / Ribosomal protein S14/S29 / ABC transporter / ABC transporter-like, ATP-binding domain / ATP-binding cassette, ABC transporter-type domain profile. / Ribosomal protein L19, conserved site / Ribosomal protein L19 signature. / Ribosomal protein L36 / Ribosomal protein L36 superfamily / Ribosomal protein L36 / Ribosomal protein L20 signature. / Ribosomal protein S3, bacterial-type / Ribosomal protein L27, conserved site / Ribosomal protein S6, conserved site / Ribosomal protein L27 signature. / Ribosomal protein S6 signature. / Ribosomal protein S19, bacterial-type / Ribosomal protein S7, bacterial/organellar-type / Ribosomal protein S11, bacterial-type / Ribosomal protein S13, bacterial-type / Ribosomal protein S20 / Ribosomal protein S20 superfamily / Ribosomal protein S20 / Ribosomal protein S9, bacterial/plastid / Ribosomal protein L14P, bacterial-type / Ribosomal protein S4, bacterial-type / Ribosomal protein L34, conserved site / Ribosomal protein L34 signature. / 30S ribosomal protein S17 / Ribosomal protein S5, bacterial-type / Ribosomal protein L22, bacterial/chloroplast-type / Ribosomal protein S6, plastid/chloroplast / Ribosomal protein L35 / Ribosomal protein L35 superfamily / Ribosomal protein L2, bacterial/organellar-type / Ribosomal protein L35 / Ribosomal protein S2, bacteria/mitochondria/plastid / Ribosomal protein L33 / Ribosomal protein L33 / Ribosomal protein L33 superfamily / : / Ribosomal protein L30, bacterial-type / Ribosomal protein L16 / Ribosomal protein L18 / Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast / Ribosomal protein S18, conserved site / Ribosomal protein S18 signature. / L28p-like
Similarity search - Domain/homology
Macrolide efflux protein / Small ribosomal subunit protein uS14 / Large ribosomal subunit protein uL6 / Small ribosomal subunit protein uS8 / Small ribosomal subunit protein uS7 / Small ribosomal subunit protein uS17 / Large ribosomal subunit protein uL1 / Large ribosomal subunit protein bL33 / Large ribosomal subunit protein uL2 / Large ribosomal subunit protein uL13 ...Macrolide efflux protein / Small ribosomal subunit protein uS14 / Large ribosomal subunit protein uL6 / Small ribosomal subunit protein uS8 / Small ribosomal subunit protein uS7 / Small ribosomal subunit protein uS17 / Large ribosomal subunit protein uL1 / Large ribosomal subunit protein bL33 / Large ribosomal subunit protein uL2 / Large ribosomal subunit protein uL13 / Large ribosomal subunit protein uL16 / Large ribosomal subunit protein bL19 / Large ribosomal subunit protein bL20 / Large ribosomal subunit protein bL21 / Large ribosomal subunit protein bL27 / Large ribosomal subunit protein uL14 / Large ribosomal subunit protein bL32 / Large ribosomal subunit protein bL34 / Small ribosomal subunit protein uS2 / Small ribosomal subunit protein uS3 / Small ribosomal subunit protein uS4 / Small ribosomal subunit protein uS9 / Small ribosomal subunit protein uS11 / Small ribosomal subunit protein uS13 / Small ribosomal subunit protein bS20 / Small ribosomal subunit protein bS18 / Small ribosomal subunit protein uS12 / Small ribosomal subunit protein uS10 / Large ribosomal subunit protein uL3 / Large ribosomal subunit protein uL4 / Large ribosomal subunit protein uL23 / Small ribosomal subunit protein uS19 / Large ribosomal subunit protein uL22 / Large ribosomal subunit protein uL24 / Large ribosomal subunit protein uL5 / Large ribosomal subunit protein uL18 / Small ribosomal subunit protein uS5 / Large ribosomal subunit protein uL30 / Large ribosomal subunit protein uL15 / Large ribosomal subunit protein bL36 / Large ribosomal subunit protein bL25 / Small ribosomal subunit protein bTHX / Small ribosomal subunit protein uS15 / Large ribosomal subunit protein bL31 / Small ribosomal subunit protein bS16 / Large ribosomal subunit protein bL35 / Large ribosomal subunit protein uL11 / Small ribosomal subunit protein bS6 / Large ribosomal subunit protein uL10 / Large ribosomal subunit protein uL29 / Large ribosomal subunit protein bL17
Similarity search - Component
Biological speciesThermus thermophilus (bacteria) / Thermus thermophilus HB8 (bacteria) / Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria) / Pseudomonas aeruginosa (bacteria)
Methodsingle particle reconstruction / cryo EM / Resolution: 3.6 Å
AuthorsSu WX / Kumar V / Ero R / Andrew SWW / Jian S / Yong-Gui G
Funding support Singapore, 1 items
OrganizationGrant numberCountry
Ministry of Education (Singapore)MOE2014-T2-1-083 Singapore
CitationJournal: Proc Natl Acad Sci U S A / Year: 2018
Title: Ribosome protection by antibiotic resistance ATP-binding cassette protein.
Authors: Weixin Su / Veerendra Kumar / Yichen Ding / Rya Ero / Aida Serra / Benjamin Sian Teck Lee / Andrew See Weng Wong / Jian Shi / Siu Kwan Sze / Liang Yang / Yong-Gui Gao /
Abstract: The ribosome is one of the richest targets for antibiotics. Unfortunately, antibiotic resistance is an urgent issue in clinical practice. Several ATP-binding cassette family proteins confer ...The ribosome is one of the richest targets for antibiotics. Unfortunately, antibiotic resistance is an urgent issue in clinical practice. Several ATP-binding cassette family proteins confer resistance to ribosome-targeting antibiotics through a yet unknown mechanism. Among them, MsrE has been implicated in macrolide resistance. Here, we report the cryo-EM structure of ATP form MsrE bound to the ribosome. Unlike previously characterized ribosomal protection proteins, MsrE is shown to bind to ribosomal exit site. Our structure reveals that the domain linker forms a unique needle-like arrangement with two crossed helices connected by an extended loop projecting into the peptidyl-transferase center and the nascent peptide exit tunnel, where numerous antibiotics bind. In combination with biochemical assays, our structure provides insight into how MsrE binding leads to conformational changes, which results in the release of the drug. This mechanism appears to be universal for the ABC-F type ribosome protection proteins.
History
DepositionMar 29, 2018-
Header (metadata) releaseAug 1, 2018-
Map releaseAug 1, 2018-
UpdateDec 4, 2019-
Current statusDec 4, 2019Processing site: PDBj / Status: Released

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Structure visualization

Movie
  • Surface view with section colored by density value
  • Surface level: 0.08
  • Imaged by UCSF Chimera
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  • Surface view colored by height
  • Surface level: 0.08
  • Imaged by UCSF Chimera
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  • Surface view with fitted model
  • Atomic models: PDB-5zlu
  • Surface level: 0.08
  • Imaged by UCSF Chimera
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Movie viewer
Structure viewerEM map:
SurfViewMolmilJmol/JSmol
Supplemental images

Downloads & links

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Map

FileDownload / File: emd_6934.map.gz / Format: CCP4 / Size: 178 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
AnnotationNone
Voxel sizeX=Y=Z: 1.1 Å
Density
Contour LevelBy AUTHOR: 0.052 / Movie #1: 0.08
Minimum - Maximum-0.339491 - 0.56833124
Average (Standard dev.)0.00219343 (±0.020815672)
SymmetrySpace group: 1
Details

EMDB XML:

Map geometry
Axis orderXYZ
Origin000
Dimensions360360360
Spacing360360360
CellA=B=C: 396.0 Å
α=β=γ: 90.0 °

CCP4 map header:

modeImage stored as Reals
Å/pix. X/Y/Z1.11.11.1
M x/y/z360360360
origin x/y/z0.0000.0000.000
length x/y/z396.000396.000396.000
α/β/γ90.00090.00090.000
MAP C/R/S123
start NC/NR/NS000
NC/NR/NS360360360
D min/max/mean-0.3390.5680.002

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Supplemental data

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Sample components

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Entire : Bacterial ribosome in complex with MsrE

EntireName: Bacterial ribosome in complex with MsrE
Components
  • Complex: Bacterial ribosome in complex with MsrE
    • RNA: RNA (25-mer)
    • Protein or peptide: 30S ribosomal protein S17
    • Protein or peptide: 30S ribosomal protein S18
    • Protein or peptide: 30S ribosomal protein S20
    • Protein or peptide: 30S ribosomal protein S19
    • Protein or peptide: 30S ribosomal protein S10
    • Protein or peptide: 30S ribosomal protein ThxRibosome
    • RNA: 16S ribosomal RNA
    • Protein or peptide: 30S ribosomal protein S2
    • Protein or peptide: 30S ribosomal protein S3
    • Protein or peptide: 30S ribosomal protein S4
    • Protein or peptide: 30S ribosomal protein S5
    • Protein or peptide: 30S ribosomal protein S6
    • Protein or peptide: 30S ribosomal protein S7
    • Protein or peptide: 30S ribosomal protein S8
    • Protein or peptide: 30S ribosomal protein S9
    • Protein or peptide: 30S ribosomal protein S11
    • Protein or peptide: 30S ribosomal protein S12
    • Protein or peptide: 30S ribosomal protein S13
    • Protein or peptide: 30S ribosomal protein S14 type ZRibosome
    • Protein or peptide: 30S ribosomal protein S15
    • Protein or peptide: 30S ribosomal protein S16
    • RNA: 23S ribosomal RNA
    • RNA: 5S ribosomal RNA
    • Protein or peptide: 50S ribosomal protein L1
    • Protein or peptide: 50S ribosomal protein L2
    • Protein or peptide: 50S ribosomal protein L3
    • Protein or peptide: 50S ribosomal protein L4
    • Protein or peptide: 50S ribosomal protein L5
    • Protein or peptide: 50S ribosomal protein L6
    • Protein or peptide: 50S ribosomal protein L10
    • Protein or peptide: 50S ribosomal protein L11
    • Protein or peptide: 50S ribosomal protein L13
    • Protein or peptide: 50S ribosomal protein L14
    • Protein or peptide: 50S ribosomal protein L15
    • Protein or peptide: 50S ribosomal protein L16
    • Protein or peptide: 50S ribosomal protein L17
    • Protein or peptide: 50S ribosomal protein L18
    • Protein or peptide: 50S ribosomal protein L19
    • Protein or peptide: 50S ribosomal protein L20
    • Protein or peptide: 50S ribosomal protein L21
    • Protein or peptide: 50S ribosomal protein L22
    • Protein or peptide: 50S ribosomal protein L23
    • Protein or peptide: 50S ribosomal protein L24
    • Protein or peptide: 50S ribosomal protein L25
    • Protein or peptide: 50S ribosomal protein L27
    • Protein or peptide: 50S ribosomal protein L29
    • Protein or peptide: 50S ribosomal protein L30
    • Protein or peptide: 50S ribosomal protein L31
    • Protein or peptide: 50S ribosomal protein L32
    • Protein or peptide: 50S ribosomal protein L33
    • Protein or peptide: 50S ribosomal protein L34
    • Protein or peptide: 50S ribosomal protein L35
    • Protein or peptide: 50S ribosomal protein L36
    • RNA: P-site tRNA
  • Protein or peptide: Macrolide efflux protein
  • Ligand: MAGNESIUM ION
  • Ligand: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER

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Supramolecule #1: Bacterial ribosome in complex with MsrE

SupramoleculeName: Bacterial ribosome in complex with MsrE / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1-#55
Source (natural)Organism: Thermus thermophilus (bacteria) / Strain: HB8
Molecular weightTheoretical: 2.8 MDa

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Macromolecule #1: RNA (25-mer)

MacromoleculeName: RNA (25-mer) / type: rna / ID: 1 / Number of copies: 1
Source (natural)Organism: Thermus thermophilus HB8 (bacteria)
Molecular weightTheoretical: 8.15698 KDa
SequenceString:
GGCAAGGAGG UAAAAAUGUU CAAAA

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Macromolecule #8: 16S ribosomal RNA

MacromoleculeName: 16S ribosomal RNA / type: rna / ID: 8 / Number of copies: 1
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 491.471938 KDa
SequenceString: UGGAGAGUUU GAUCCUGGCU CAGGGUGAAC GCUGGCGGCG UGCCUAAGAC AUGCAAGUCG UGCGGGCCGC GGGGUUUUAC UCCGUGGUC AGCGGCGGAC GGGUGAGUAA CGCGUGGGUG ACCUACCCGG AAGAGGGGGA CAACCCGGGG AAACUCGGGC U AAUCCCCC ...String:
UGGAGAGUUU GAUCCUGGCU CAGGGUGAAC GCUGGCGGCG UGCCUAAGAC AUGCAAGUCG UGCGGGCCGC GGGGUUUUAC UCCGUGGUC AGCGGCGGAC GGGUGAGUAA CGCGUGGGUG ACCUACCCGG AAGAGGGGGA CAACCCGGGG AAACUCGGGC U AAUCCCCC AUGUGGACCC GCCCCUUGGG GUGUGUCCAA AGGGCUUUGC CCGCUUCCGG AUGGGCCCGC GUCCCAUCAG CU AGUUGGU GGGGUAAUGG CCCACCAAGG CGACGACGGG UAGCCGGUCU GAGAGGAUGG CCGGCCACAG GGGCACUGAG ACA CGGGCC CCACUCCUAC GGGAGGCAGC AGUUAGGAAU CUUCCGCAAU GGGCGCAAGC CUGACGGAGC GACGCCGCUU GGAG GAAGA AGCCCUUCGG GGUGUAAACU CCUGAACCCG GGACGAAACC CCCGACGAGG GGACUGACGG UACCGGGGUA AUAGC GCCG GCCAACUCCG UGCCAGCAGC CGCGGUAAUA CGGAGGGCGC GAGCGUUACC CGGAUUCACU GGGCGUAAAG GGCGUG UAG GCGGCCUGGG GCGUCCCAUG UGAAAGACCA CGGCUCAACC GUGGGGGAGC GUGGGAUACG CUCAGGCUAG ACGGUGG GA GAGGGUGGUG GAAUUCCCGG AGUAGCGGUG AAAUGCGCAG AUACCGGGAG GAACGCCGAU GGCGAAGGCA GCCACCUG G UCCACCCGUG ACGCUGAGGC GCGAAAGCGU GGGGAGCAAA CCGGAUUAGA UACCCGGGUA GUCCACGCCC UAAACGAUG CGCGCUAGGU CUCUGGGUCU CCUGGGGGCC GAAGCUAACG CGUUAAGCGC GCCGCCUGGG GAGUACGGCC GCAAGGCUGA AACUCAAAG GAAUUGACGG GGGCCCGCAC AAGCGGUGGA GCAUGUGGUU UAAUUCGAAG CAACGCGAAG AACCUUACCA G GCCUUGAC AUGCUAGGGA ACCCGGGUGA AAGCCUGGGG UGCCCGCGAG GGGAGCCCUA GCACAGGUGC UGCAUGGCCG UC GUCAGCU CGUGCCGUGA GGUGUUGGGU UAAGUCCCGC AACGAGCGCA ACCCCCGCCG UUAGUUGCCA GCGGUUCGGC CGG GCACUC UAACGGGACU GCCCGCGAAA GCGGGAGGAA GGAGGGGACG ACGUCUGGUC AGCAUGGCCC UUACGGCCUG GGCG ACACA CGUGCUACAA UGCCCACUAC AAAGCGAUGC CACCCGGCAA CGGGGAGCUA AUCGCAAAAA GGUGGGCCCA GUUCG GAUU GGGGUCUGCA ACCCGACCCC AUGAAGCCGG AAUCGCUAGU AAUCGCGGAU CAGCCAUGCC GCGGUGAAUA CGUUCC CGG GCCUUGUACA CACCGCCCGU CACGCCAUGG GAGCGGGCUC UACCCGAAGU CGCCGGGAGC CUACGGGCAG GCGCCGA GG GUAGGGCCCG UGACUGGGGC GAAGUCGUAA CAAGGUAGCU GUACCGGAAG GUGCGGCUGG AUCACCUCCU UU

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Macromolecule #23: 23S ribosomal RNA

MacromoleculeName: 23S ribosomal RNA / type: rna / ID: 23 / Number of copies: 1
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 935.028375 KDa
SequenceString: AAGAUGGUAA GGGCCCACGG UGGAUGCCUC GGCACCCGAG CCGAUGAAGG ACGUGGCUAC CUGCGAUAAG CCAGGGGGAG CCGGUAGCG GGCGUGGAUC CCUGGAUGUC CGAAUGGGGG AACCCGGCCG GCGGGAAGCC GGUCACCGCG CUUUUGCGCG G GGGGAACC ...String:
AAGAUGGUAA GGGCCCACGG UGGAUGCCUC GGCACCCGAG CCGAUGAAGG ACGUGGCUAC CUGCGAUAAG CCAGGGGGAG CCGGUAGCG GGCGUGGAUC CCUGGAUGUC CGAAUGGGGG AACCCGGCCG GCGGGAAGCC GGUCACCGCG CUUUUGCGCG G GGGGAACC UGGGGAACUG AAACAUCUCA GUACCCAGAG GAGAGGAAAG AGAAAUCGAC UCCCUGAGUA GCGGCGAGCG AA AGGGGAC CAGCCUAAAC CGUCCGGCUU GUCCGGGCGG GGUCGUGGGG CCCUCGGACA CCGAAUCCCC AGCCUAGCCG AAG CUGUUG GGAAGCAGCG CCAGAGAGGG UGAAAGCCCC GUAGGCGAAA GGUGGGGGGA UAGGUAGGGU GCCCGAGUAC CCCG UGGUU CGUGGAGCCA UGGGGGAAUC UGGGCGGACC ACCGCCUAAG GCUAAGUACU CCGGGUGACC GAUAGCGCAC CAGUA CCGU GAGGGAAAGG UGAAAAGAAC CCCGGGAGGG GAGUGAAAUA GAGCCUGAAA CCGUGGGCUU ACAAGCAGUC ACGGCC CCG CAAGGGGUUG UGGCGUGCCU AUUGAAGCAU GAGCCGGCGA CUCACGGUCG UGGGCGAGCU UAACCGUUGA GCGGAGG CG UAGGGAAACC GAGUCCGAAC AGGGCGCAAA GUCCGCGGCC GUGGACCCGA AACCGGGCGA GCUAGCCCUG GCCAGGGU G AAGCUGGGGU GAGACCCAGU GGAGGCCCGA ACCGGUGGGG GAUGCAAACC CCUCGGAUGA GCUGGGGCUA GGAGUGAAA AGCUAACCGA GCCCGGAGAU AGCUGGUUCU CCCCGAAAUG ACUUUAGGGU CAGCCUCAGG CGCUGACUGG GGCCUGUAGA GCACUGAUA GGGCUAGGGG GCCCACCAGC CUACCAAACC CUGUCAAACU CCGAAGGGUC CCAGGUGGAG CCUGGGAGUG A GGGCGCGA GCGAUAACGU CCGCGUCCGA GCGCGGGAAC AACCGAGACC GCCAGCUAAG GCCCCCAAGU CUGGGCUAAG UG GUAAAGG AUGUGGCGCC GCGAAGACAG CCAGGAGGUU GGCUUAGAAG CAGCCAUCCU UUAAAGAGUG CGUAAUAGCU CAC UGGUCG AGUGGCGCCG CGCCGAAAAU GAUGCGGGGC UUAAGCCCAG CGCCGAAGCU GCGGGUCUGG GGGAUGACCC CAGG CGGUA GGGGAGCGUU CCCGAUGCCG AUGAAGGCCG ACCCGCGAGG CGGCUGGAGG UAAGGGAAGU GCGAAUGCCG GCAUG AGUA ACGAUAAAGA GGGUGAGAAU CCCUCUCGCC GUAAGCCCAA GGGUUCCUAC GCAAUGGUCG UCAGCGUAGG GUUAGG CGG GACCUAAGGU GAAGCCGAAA GGCGUAGCCG AAGGGCAGCC GGUUAAUAUU CCGGCCCUUC CCGCAGGUGC GAUGGGG GG ACGCUCUAGG CUAGGGGGAC CGGAGCCAAU GGACGAGCCC GGCCAGAAGC GCAGGGUGGG AGGUAGGCAA AUCCGCCU C CCAACAAGCU CUGCGUGGUG GGGAAGCCCG UACGGGUGAC AACCCCCCGA AGCCAGGGAG CCAAGAAAAG CCUCUAAGC ACAACCUGCG GGAACCCGUA CCGCAAACCG ACACAGGUGG GCGGGUGCAA GAGCACUCAG GCGCGCGGGA GAACCCUCGC CAAGGAACU CUGCAAGUUG GCCCCGUAAC UUCGGGAGAA GGGGUGCUCC CUGGGGUGAU GAGCCCCGGG AGCCGCAGUG A ACAGGCUC UGGCGACUGU UUACCAAAAA CACAGCUCUC UGCGAACUCG UAAGAGGAGG UAUAGGGAGC GACGCUUGCC CG GUGCCGG AAGGUCAAGG GGAGGGGUGC AAGCCCCGAA CCGAAGCCCC GGUGAACGGC GGCCGUAACU AUAACGGUCC UAA GGUAGC GAAAUUCCUU GUCGGGUAAG UUCCGACCUG CACGAAAAGC GUAACGACCG GAGCGCUGUC UCGGCGAGGG ACCC GGUGA AAUUGAACUG GCCGUGAAGA UGCGGCCUAC CCGUGGCAGG ACGAAAAGAC CCCGUGGAGC UUUACUGCAG CCUGG UGUU GGCUCUUGGU CGCGCCUGCG UAGGAUAGGU GGGAGCCUGU GAACCCCCGC CUCCGGGUGG GGGGGAGGCG CCGGUG AAA UACCACCCUG GCGCGGCUGG GGGCCUAACC CUCGGAUGGG GGGACAGCGC UUGGCGGGCA GUUUGACUGG GGCGGUC GC CUCCUAAAAG GUAACGGAGG CGCCCAAAGG UCCCCUCAGG CGGGACGGAA AUCCGCCGGA GAGCGCAAGG GUAGAAGG G GGCCUGACUG CGAGGCCUGC AAGCCGAGCA GGGGCGAAAG CCGGGCCUAG UGAACCGGUG GUCCCGUGUG GAAGGGCCA UCGAUCAACG GAUAAAAGUU ACCCCGGGGA UAACAGGCUG AUCUCCCCCG AGCGUCCACA GCGGCGGGGA GGUUUGGCAC CUCGAUGUC GGCUCGUCGC AUCCUGGGGC UGAAGAAGGU CCCAAGGGUU GGGCUGUUCG CCCAUUAAAG CGGCACGCGA G CUGGGUUC AGAACGUCGU GAGACAGUUC GGUCUCUAUC CGCCACGGGC GCAGGAGGCU UGAGGGGGGC UCUUCCUAGU AC GAGAGGA CCGGAAGGGA CGCACCUCUG GUUUCCCAGC UGUCCCUCCA GGGGCAUAAG CUGGGUAGCC AUGUGCGGAA GGG AUAACC GCUGAAAGCA UCUAAGCGGG AAGCCCGCCC CAAGAUGAGG CCUCCACGGC GUCAAGCCGG AAGGACCCGG GAAG ACCAC CCGGUGGAUG GGCCGGGGGU GUAAGCGCCG CGAGGCGUUG AGCCGACCGG UCCCAAUCGU CCGAGGUCUU

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Macromolecule #24: 5S ribosomal RNA

MacromoleculeName: 5S ribosomal RNA / type: rna / ID: 24 / Number of copies: 1
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 39.846781 KDa
SequenceString:
AAUCCCCCGU GCCCAUAGCG GCGUGGAACC ACCCGUUCCC AUUCCGAACA CGGAAGUGAA ACGCGCCAGC GCCGAUGGUA CUGGGCGGG CGACCGCCUG GGAGAGUAGG UCGGUGCGGG GGAU

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Macromolecule #55: P-site tRNA

MacromoleculeName: P-site tRNA / type: rna / ID: 55 / Number of copies: 1
Source (natural)Organism: Thermus thermophilus HB8 (bacteria)
Molecular weightTheoretical: 24.885 KDa
SequenceString:
CGCGGGG(4SU)GG AGCAGCCCGG UAGCUCGUCG GG(OMC)ACAUAAC CCGAAG(7MG)UCG UCGG(5MU)(PSU)CAAA UCCGGCCCC CGCAACCA

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Macromolecule #2: 30S ribosomal protein S17

MacromoleculeName: 30S ribosomal protein S17 / type: protein_or_peptide / ID: 2 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 12.193475 KDa
SequenceString:
PKKVLTGVVV SDKMQKTVTV LVERQFPHPL YGKVIKRSKK YLAHDPEEKY KLGDVVEIIE SRPISKRKRF RVLRLVESGR MDLVEKYLI RRQNYQSLSK RGGKA

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Macromolecule #3: 30S ribosomal protein S18

MacromoleculeName: 30S ribosomal protein S18 / type: protein_or_peptide / ID: 3 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 8.483172 KDa
SequenceString:
PSRKAKVKAT LGEFDLRDYR NVEVLKRFLS ETGKILPRRR TGLSGKEQRI LAKTIKRARI LGLLPFTEKL VRK

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Macromolecule #4: 30S ribosomal protein S20

MacromoleculeName: 30S ribosomal protein S20 / type: protein_or_peptide / ID: 4 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 11.736143 KDa
SequenceString:
MAQKKPKRNL SALKRHRQSL KRRLRNKAKK SAIKTLSKKA IQLAQEGKAE EALKIMRKAE SLIDKAAKGS TLHKNAAARR KSRLMRKVR QLLEAAGAPL IGGGLSA

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Macromolecule #5: 30S ribosomal protein S19

MacromoleculeName: 30S ribosomal protein S19 / type: protein_or_peptide / ID: 5 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 10.605464 KDa
SequenceString:
MPRSLKKGVF VDDHLLEKVL ELNAKGEKRL IKTWSRRSTI VPEMVGHTIA VYNGKQHVPV YITENMVGHK LGEFAPTRTY RGHGKEAKA TKKK

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Macromolecule #6: 30S ribosomal protein S10

MacromoleculeName: 30S ribosomal protein S10 / type: protein_or_peptide / ID: 6 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 11.954968 KDa
SequenceString:
MPKIRIKLRG FDHKTLDASA QKIVEAARRS GAQVSGPIPL PTRVRRFTVI RGPFKHKDSR EHFELRTHNR LVDIINPNRK TIEQLMTLD LPTGVEIEIK TVGGGR

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Macromolecule #7: 30S ribosomal protein Thx

MacromoleculeName: 30S ribosomal protein Thx / type: protein_or_peptide / ID: 7 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 3.35003 KDa
SequenceString:
MGKGDRRTRR GKIWRGTYGK YRPRKKK

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Macromolecule #9: 30S ribosomal protein S2

MacromoleculeName: 30S ribosomal protein S2 / type: protein_or_peptide / ID: 9 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 29.317703 KDa
SequenceString: MPVEITVKEL LEAGVHFGHE RKRWNPKFAR YIYAERNGIH IIDLQKTMEE LERTFRFIED LAMRGGTILF VGTKKQAQDI VRMEAERAG MPYVNQRWLG GMLTNFKTIS QRVHRLEELE ALFASPEIEE RPKKEQVRLK HELERLQKYL SGFRLLKRLP D AIFVVDPT ...String:
MPVEITVKEL LEAGVHFGHE RKRWNPKFAR YIYAERNGIH IIDLQKTMEE LERTFRFIED LAMRGGTILF VGTKKQAQDI VRMEAERAG MPYVNQRWLG GMLTNFKTIS QRVHRLEELE ALFASPEIEE RPKKEQVRLK HELERLQKYL SGFRLLKRLP D AIFVVDPT KEAIAVREAR KLFIPVIALA DTDSDPDLVD YIIPGNDDAI RSIQLILSRA VDLIIQARGG VVEPSPSYAL VQ EAEATET PEGESEVEA

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Macromolecule #10: 30S ribosomal protein S3

MacromoleculeName: 30S ribosomal protein S3 / type: protein_or_peptide / ID: 10 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 26.751076 KDa
SequenceString: MGNKIHPIGF RLGITRDWES RWYAGKKQYR HLLLEDQRIR GLLEKELYSA GLARVDIERA ADNVAVTVHV AKPGVVIGRG GERIRVLRE ELAKLTGKNV ALNVQEVQNP NLSAPLVAQR VAEQIERRFA VRRAIKQAVQ RVMESGAKGA KVIVSGRIGG A EQARTEWA ...String:
MGNKIHPIGF RLGITRDWES RWYAGKKQYR HLLLEDQRIR GLLEKELYSA GLARVDIERA ADNVAVTVHV AKPGVVIGRG GERIRVLRE ELAKLTGKNV ALNVQEVQNP NLSAPLVAQR VAEQIERRFA VRRAIKQAVQ RVMESGAKGA KVIVSGRIGG A EQARTEWA AQGRVPLHTL RANIDYGFAL ARTTYGVLGV KAYIFLGEVI GGQKPKARPE LPKAEERPRR RRPAVRVKKE E

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Macromolecule #11: 30S ribosomal protein S4

MacromoleculeName: 30S ribosomal protein S4 / type: protein_or_peptide / ID: 11 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 24.373447 KDa
SequenceString: MGRYIGPVCR LCRREGVKLY LKGERCYSPK CAMERRPYPP GQHGQKRARR PSDYAVRLRE KQKLRRIYGI SERQFRNLFE EASKKKGVT GSVFLGLLES RLDNVVYRLG FAVSRRQARQ LVRHGHITVN GRRVDLPSYR VRPGDEIAVA EKSRNLELIR Q NLEAMKGR ...String:
MGRYIGPVCR LCRREGVKLY LKGERCYSPK CAMERRPYPP GQHGQKRARR PSDYAVRLRE KQKLRRIYGI SERQFRNLFE EASKKKGVT GSVFLGLLES RLDNVVYRLG FAVSRRQARQ LVRHGHITVN GRRVDLPSYR VRPGDEIAVA EKSRNLELIR Q NLEAMKGR KVGPWLSLDV EGMKGKFLRL PDREDLALPV NEQLVIEFYS R

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Macromolecule #12: 30S ribosomal protein S5

MacromoleculeName: 30S ribosomal protein S5 / type: protein_or_peptide / ID: 12 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 17.583416 KDa
SequenceString:
MPETDFEEKM ILIRRTARMQ AGGRRFRFGA LVVVGDRQGR VGLGFGKAPE VPLAVQKAGY YARRNMVEVP LQNGTIPHEI EVEFGASKI VLKPAAPGTG VIAGAVPRAI LELAGVTDIL TKELGSRNPI NIAYATMEAL RQLRTKADVE RLRKGEAHAQ A QG

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Macromolecule #13: 30S ribosomal protein S6

MacromoleculeName: 30S ribosomal protein S6 / type: protein_or_peptide / ID: 13 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 11.988753 KDa
SequenceString:
MRRYEVNIVL NPNLDQSQLA LEKEIIQRAL ENYGARVEKV EELGLRRLAY PIAKDPQGYF LWYQVEMPED RVNDLARELR IRDNVRRVM VVKSQEPFLA NA

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Macromolecule #14: 30S ribosomal protein S7

MacromoleculeName: 30S ribosomal protein S7 / type: protein_or_peptide / ID: 14 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 18.050973 KDa
SequenceString:
MARRRRAEVR QLQPDLVYGD VLVTAFINKI MRDGKKNLAA RIFYDACKII QEKTGQEPLK VFKQAVENVK PRMEVRSRRV GGANYQVPM EVSPRRQQSL ALRWLVQAAN QRPERRAAVR IAHELMDAAE GKGGAVKKKE DVERMAEANR AYAHYRW

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Macromolecule #15: 30S ribosomal protein S8

MacromoleculeName: 30S ribosomal protein S8 / type: protein_or_peptide / ID: 15 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 15.86857 KDa
SequenceString:
MLTDPIADML TRIRNATRVY KESTDVPASR FKEEILRILA REGFIKGYER VDVDGKPYLR VYLKYGPRRQ GPDPRPEQVI HHIRRISKP GRRVYVGVKE IPRVRRGLGI AILSTSKGVL TDREARKLGV GGELICEVW

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Macromolecule #16: 30S ribosomal protein S9

MacromoleculeName: 30S ribosomal protein S9 / type: protein_or_peptide / ID: 16 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 14.410614 KDa
SequenceString:
MEQYYGTGRR KEAVARVFLR PGNGKVTVNG QDFNEYFQGL VRAVAALEPL RAVDALGHFD AYITVRGGGK SGQIDAIKLG IARALVQYN PDYRAKLKPL GFLTRDARVV ERKKYGKHKA RRAPQYSKR

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Macromolecule #17: 30S ribosomal protein S11

MacromoleculeName: 30S ribosomal protein S11 / type: protein_or_peptide / ID: 17 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 13.737868 KDa
SequenceString:
MAKKPSKKKV KRQVASGRAY IHASYNNTIV TITDPDGNPI TWSSGGVIGY KGSRKGTPYA AQLAALDAAK KAMAYGMQSV DVIVRGTGA GREQAIRALQ ASGLQVKSIV DDTPVPHNGC RPKKKFRKAS

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Macromolecule #18: 30S ribosomal protein S12

MacromoleculeName: 30S ribosomal protein S12 / type: protein_or_peptide / ID: 18 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 14.637384 KDa
SequenceString:
MPTINQLVRK GREKVRKKSK VPALKGAPFR RGVCTVVRTV TPKKPNSALR KVAKVRLTSG YEVTAYIPGE GHNLQEHSVV LIRGGRVKD LPGVRYHIVR GVYDAAGVKD RKKSRSKYGT KKPKEAAKTA AKK

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Macromolecule #19: 30S ribosomal protein S13

MacromoleculeName: 30S ribosomal protein S13 / type: protein_or_peptide / ID: 19 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 14.338861 KDa
SequenceString:
MARIAGVEIP RNKRVDVALT YIYGIGKARA KEALEKTGIN PATRVKDLTE AEVVRLREYV ENTWKLEGEL RAEVAANIKR LMDIGCYRG LRHRRGLPVR GQRTRTNART RKGPRKTVAG KKKAPRK

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Macromolecule #20: 30S ribosomal protein S14 type Z

MacromoleculeName: 30S ribosomal protein S14 type Z / type: protein_or_peptide / ID: 20 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 7.158725 KDa
SequenceString:
MARKALIEKA KRTPKFKVRA YTRCVRCGRA RSVYRFFGLC RICLRELAHK GQLPGVRKAS W

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Macromolecule #21: 30S ribosomal protein S15

MacromoleculeName: 30S ribosomal protein S15 / type: protein_or_peptide / ID: 21 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 10.578407 KDa
SequenceString:
MPITKEEKQK VIQEFARFPG DTGSTEVQVA LLTLRINRLS EHLKVHKKDH HSHRGLLMMV GQRRRLLRYL QREDPERYRA LIEKLGIRG

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Macromolecule #22: 30S ribosomal protein S16

MacromoleculeName: 30S ribosomal protein S16 / type: protein_or_peptide / ID: 22 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 10.409983 KDa
SequenceString:
MVKIRLARFG SKHNPHYRIV VTDARRKRDG KYIEKIGYYD PRKTTPDWLK VDVERARYWL SVGAQPTDTA RRLLRQAGVF RQEAREGA

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Macromolecule #25: 50S ribosomal protein L1

MacromoleculeName: 50S ribosomal protein L1 / type: protein_or_peptide / ID: 25 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 24.867699 KDa
SequenceString: MPKHGKRYRA LLEKVDPNKI YTIDEAAHLV KELATAKFDE TVEVHAKLGI DPRRSDQNVR GTVSLPHGLG KQVRVLAIAK GEKIKEAEE AGADYVGGEE IIQKILDGWM DFDAVVATPD VMGAVGSKLG RILGPRGLLP NPKAGTVGFN IGEIIREIKA G RIEFRNDK ...String:
MPKHGKRYRA LLEKVDPNKI YTIDEAAHLV KELATAKFDE TVEVHAKLGI DPRRSDQNVR GTVSLPHGLG KQVRVLAIAK GEKIKEAEE AGADYVGGEE IIQKILDGWM DFDAVVATPD VMGAVGSKLG RILGPRGLLP NPKAGTVGFN IGEIIREIKA G RIEFRNDK TGAIHAPVGK ASFPPEKLAD NIRAFIRALE AHKPEGAKGT FLRSVYVTTT MGPSVRINPH S

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Macromolecule #26: 50S ribosomal protein L2

MacromoleculeName: 50S ribosomal protein L2 / type: protein_or_peptide / ID: 26 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 30.532551 KDa
SequenceString: MAVKKFKPYT PSRRFMTVAD FSEITKTEPE KSLVKPLKKT GGRNNQGRIT VRFRGGGHKR LYRIIDFKRW DKVGIPAKVA AIEYDPNRS ARIALLHYVD GEKRYIIAPD GLQVGQQVVA GPDAPIQVGN ALPLRFIPVG TVVHAVELEP KKGAKLARAA G TSAQIQGR ...String:
MAVKKFKPYT PSRRFMTVAD FSEITKTEPE KSLVKPLKKT GGRNNQGRIT VRFRGGGHKR LYRIIDFKRW DKVGIPAKVA AIEYDPNRS ARIALLHYVD GEKRYIIAPD GLQVGQQVVA GPDAPIQVGN ALPLRFIPVG TVVHAVELEP KKGAKLARAA G TSAQIQGR EGDYVILRLP SGELRKVHGE CYATVGAVGN ADHKNIVLGK AGRSRWLGRR PHVRGAAMNP VDHPHGGGEG RA PRGRPPA SPWGWQTKGL KTRKRRKPSS RFIIARRKK

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Macromolecule #27: 50S ribosomal protein L3

MacromoleculeName: 50S ribosomal protein L3 / type: protein_or_peptide / ID: 27 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 22.450213 KDa
SequenceString: MKGILGVKVG MTRIFRDDRA VPVTVILAGP CPVVQRRTPE KDGYTAVQLG FLPQNPKRVN RPLKGHFAKA GVEPVRILRE IRDFNPEGD TVTVEIFKPG ERVDVTGTSK GRGFAGVMKR WNFAGGPDSH GAHKIHRHPG SIGNRKTPGR VYKGKKMAGH Y GAERVTVM ...String:
MKGILGVKVG MTRIFRDDRA VPVTVILAGP CPVVQRRTPE KDGYTAVQLG FLPQNPKRVN RPLKGHFAKA GVEPVRILRE IRDFNPEGD TVTVEIFKPG ERVDVTGTSK GRGFAGVMKR WNFAGGPDSH GAHKIHRHPG SIGNRKTPGR VYKGKKMAGH Y GAERVTVM NLEVVDVIPE ENLLLVKGAV PGPNGGLVIV RETKKAAK

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Macromolecule #28: 50S ribosomal protein L4

MacromoleculeName: 50S ribosomal protein L4 / type: protein_or_peptide / ID: 28 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 23.271914 KDa
SequenceString: MKEVAVYQIP VLSPSGRREL AADLPAEINP HLLWEVVRWQ LAKRRRGTAS TKTRGEVAYS GRKIWPQKHT GRARHGDIGA PIFVGGGVV FGPKPRDYSY TLPKKVRKKG LAMAVADRAR EGKLLLVEAF AGVNGKTKEF LAWAKEAGLD GSESVLLVTG N ELVRRAAR ...String:
MKEVAVYQIP VLSPSGRREL AADLPAEINP HLLWEVVRWQ LAKRRRGTAS TKTRGEVAYS GRKIWPQKHT GRARHGDIGA PIFVGGGVV FGPKPRDYSY TLPKKVRKKG LAMAVADRAR EGKLLLVEAF AGVNGKTKEF LAWAKEAGLD GSESVLLVTG N ELVRRAAR NLPWVVTLAP EGLNVYDIVR TERLVMDLDA WEVFQNRIGG EA

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Macromolecule #29: 50S ribosomal protein L5

MacromoleculeName: 50S ribosomal protein L5 / type: protein_or_peptide / ID: 29 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 21.061596 KDa
SequenceString:
MPLDVALKRK YYEEVRPELI RRFGYQNVWE VPRLEKVVIN QGLGEAKEDA RILEKAAQEL ALITGQKPAV TRAKKSISNF KLRKGMPIG LRVTLRRDRM WIFLEKLLNV ALPRIRDFRG LNPNSFDGRG NYNLGLREQL IFPEITYDMV DALRGMDIAV V TTAETDEE ARALLELLGF PFRK

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Macromolecule #30: 50S ribosomal protein L6

MacromoleculeName: 50S ribosomal protein L6 / type: protein_or_peptide / ID: 30 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 19.568926 KDa
SequenceString:
MSRIGRLPIP VPKGVSVEVA PGRVKVKGPK GELEVPVSPE MRVVVEEGVV RVERPSDERR HKSLHGLTRT LIANAVKGVS EGYSKELLI KGIGYRARLV GRALELTVGF SHPVVVEPPE GITFEVPEPT RVRVSGIDKQ KVGQVAANIR AIRKPSAYHE K GIYYAGEP VRLKPGKAGA KK

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Macromolecule #31: 50S ribosomal protein L10

MacromoleculeName: 50S ribosomal protein L10 / type: protein_or_peptide / ID: 31 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 18.586639 KDa
SequenceString:
MPNKRNVELL ATLKENLERA QGSFFLVNYQ GLPAKETHAL RQALKQNGAR LFVAKNTLIR LALKELGLPE LDGLQGPSAV VFYEDPVAA AKTLVQFAKS NPKGIPQVKS GLLQGQILTA KDVEALAELP TMDELRAELV GVLQAPMAEL VGVLGGVARE L VGILEAYA EKKAA

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Macromolecule #32: 50S ribosomal protein L11

MacromoleculeName: 50S ribosomal protein L11 / type: protein_or_peptide / ID: 32 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 15.526111 KDa
SequenceString:
MKKVVAVVKL QLPAGKATPA PPVGPALGQH GANIMEFVKA FNAATANMGD AIVPVEITIY ADRSFTFVTK TPPASYLIRK AAGLEKGAH KPGREKVGRI TWEQVLEIAK QKMPDLNTTD LEAAARMIAG SARSMGVEVV GAPEVKDA

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Macromolecule #33: 50S ribosomal protein L13

MacromoleculeName: 50S ribosomal protein L13 / type: protein_or_peptide / ID: 33 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 15.927903 KDa
SequenceString:
MKTYVPKQVE PRWVLIDAEG KTLGRLATKI ATLLRGKHRP DWTPNVAMGD FVVVVNADKI RVTGKKLEQK IYTRYSGYPG GLKKIPLEK MLATHPERVL EHAVKGMLPK GPLGRRLFKR LKVYAGPDHP HQAQRPEKLE V

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Macromolecule #34: 50S ribosomal protein L14

MacromoleculeName: 50S ribosomal protein L14 / type: protein_or_peptide / ID: 34 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 13.309586 KDa
SequenceString:
MIQPQTYLEV ADNTGARKIM CIRVLKGSNA KYATVGDVIV ASVKEAIPRG AVKEGDVVKA VVVRTKKEVK RPDGSAIRFD DNAAVIINN QLEPRGTRVF GPVARELREK GFMKIVSLAP EVL

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Macromolecule #35: 50S ribosomal protein L15

MacromoleculeName: 50S ribosomal protein L15 / type: protein_or_peptide / ID: 35 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 16.319142 KDa
SequenceString:
MKLSDLRPNP GANKRRKRVG RGPGSGHGKT ATRGHKGQKS RSGGLKDPRR FEGGRSTTLM RLPKRGMQGQ VPGEIKRPRY QGVNLKDLA RFEGEVTPEL LVRAGLLKKG YRLKILGEGE AKPLKVVAHA FSKSALEKLK AAGGEPVLLE A

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Macromolecule #36: 50S ribosomal protein L16

MacromoleculeName: 50S ribosomal protein L16 / type: protein_or_peptide / ID: 36 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 15.993909 KDa
SequenceString:
MLMPRRMKYR KQQRGRLKGA TKGGDYVAFG DYGLVALEPA WITAQQIEAA RVAMVRHFRR GGKIFIRIFP DKPYTKKPLE VRMGKGKGN VEGYVAVVKP GRVMFEVAGV TEEQAMEALR IAGHKLPIKT KIVRRDAYDE AQ

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Macromolecule #37: 50S ribosomal protein L17

MacromoleculeName: 50S ribosomal protein L17 / type: protein_or_peptide / ID: 37 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 13.750148 KDa
SequenceString:
MRHLKSGRKL NRHSSHRLAL YRNQAKSLLT HGRITTTVPK AKELRGFVDH LIHLAKRGDL HARRLVLRDL QDVKLVRKLF DEIAPRYRD RQGGYTRVLK LAERRRGDGA PLALVELVE

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Macromolecule #38: 50S ribosomal protein L18

MacromoleculeName: 50S ribosomal protein L18 / type: protein_or_peptide / ID: 38 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 12.639845 KDa
SequenceString:
MARLTAYERR KFRVRNRIKR TGRLRLSVFR SLKHIYAQII DDEKGVTLVS ASSLALKLKG NKTEVARQVG RALAEKALAL GIKQVAFDR GPYKYHGRVK ALAEGAREGG LEF

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Macromolecule #39: 50S ribosomal protein L19

MacromoleculeName: 50S ribosomal protein L19 / type: protein_or_peptide / ID: 39 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 17.18883 KDa
SequenceString:
MNRGALIKLV ESRYVRTDLP EFRPGDTVRV SYKVKEGNRT RIQDFEGIVI RIRRNGFNTT FTVRKVSYGV GVERIFPLHS PLIQKIDIV QRGRARRAKL YFIRNLSDRE IRRKLRADRK RIDQDRAAER AAKEEAQKAQ EPKASQE

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Macromolecule #40: 50S ribosomal protein L20

MacromoleculeName: 50S ribosomal protein L20 / type: protein_or_peptide / ID: 40 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 13.779275 KDa
SequenceString:
MPRAKTGVVR RRKHKKILKL AKGYWGLRSK SFRKARETLF AAGNYAYAHR KRRKRDFRRL WIVRINAACR QHGLNYSTFI HGLKKAGIE VDRKNLADLA VREPQVFAEL VERAKAAQG

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Macromolecule #41: 50S ribosomal protein L21

MacromoleculeName: 50S ribosomal protein L21 / type: protein_or_peptide / ID: 41 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 11.069153 KDa
SequenceString:
MFAIVKTGGK QYRVEPGLKL RVEKLDAEPG ATVELPVLLL GGEKTVVGTP VVEGASVVAE VLGHGRGKKI LVSKFKAKVQ YRRKKGHRQ PYTELLIKEI RG

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Macromolecule #42: 50S ribosomal protein L22

MacromoleculeName: 50S ribosomal protein L22 / type: protein_or_peptide / ID: 42 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 12.808055 KDa
SequenceString:
MEAKAIARYV RISPRKVRLV VDLIRGKSLE EARNILRYTN KRGAYFVAKV LESAAANAVN NHDMLEDRLY VKAAYVDEGP ALKRVLPRA RGRADIIKKR TSHITVILGE KHGK

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Macromolecule #43: 50S ribosomal protein L23

MacromoleculeName: 50S ribosomal protein L23 / type: protein_or_peptide / ID: 43 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 10.759808 KDa
SequenceString:
MKTAYDVILA PVLSEKAYAG FAEGKYTFWV HPKATKTEIK NAVETAFKVK VVKVNTLHVR GKKKRLGRYL GKRPDRKKAI VQVAPGQKI EALEGLI

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Macromolecule #44: 50S ribosomal protein L24

MacromoleculeName: 50S ribosomal protein L24 / type: protein_or_peptide / ID: 44 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 12.085611 KDa
SequenceString:
MRVKMHVKKG DTVLVASGKY KGRVGKVKEV LPKKYAVIVE GVNIVKKAVR VSPKYPQGGF IEKEAPLHAS KVRPICPACG KPTRVRKKF LENGKKIRVC AKCGGALDTE E

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Macromolecule #45: 50S ribosomal protein L25

MacromoleculeName: 50S ribosomal protein L25 / type: protein_or_peptide / ID: 45 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 23.238572 KDa
SequenceString: MEYRLKAYYR EGEKPSALRR AGKLPGVMYN RHLNRKVYVD LVEFDKVFRQ ASIHHVIVLE LPDGQSLPTL VRQVNLDKRR RRPEHVDFF VLSDEPVEMY VPLRFVGTPA GVRAGGVLQE IHRDILVKVS PRNIPEFIEV DVSGLEIGDS LHASDLKLPP G VELAVSPE ...String:
MEYRLKAYYR EGEKPSALRR AGKLPGVMYN RHLNRKVYVD LVEFDKVFRQ ASIHHVIVLE LPDGQSLPTL VRQVNLDKRR RRPEHVDFF VLSDEPVEMY VPLRFVGTPA GVRAGGVLQE IHRDILVKVS PRNIPEFIEV DVSGLEIGDS LHASDLKLPP G VELAVSPE ETIAAVVPPE DVEKLAEEAA AEVAEPEVIK KGKEEEEE

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Macromolecule #46: 50S ribosomal protein L27

MacromoleculeName: 50S ribosomal protein L27 / type: protein_or_peptide / ID: 46 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 9.529074 KDa
SequenceString:
MAHKKGLGST RNGRDSQAKR LGVKRYEGQV VRAGNILVRQ RGTRFKPGKN VGMGRDFTLF ALVDGVVEFQ DRGRLGRYVH VRPLA

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Macromolecule #47: 50S ribosomal protein L29

MacromoleculeName: 50S ribosomal protein L29 / type: protein_or_peptide / ID: 47 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 8.112597 KDa
SequenceString:
MRKQLEEARK LSPVELEKLV REKKRELMEL RFQASIGQLS QNHKIRDLKR QIARLLTVLN EKRRQNA

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Macromolecule #48: 50S ribosomal protein L30

MacromoleculeName: 50S ribosomal protein L30 / type: protein_or_peptide / ID: 48 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 6.799126 KDa
SequenceString:
MPRLKVKLVK SPIGYPKDQK AALKALGLRR LQQERVLEDT PAIRGNVEKV AHLVRVEVVE

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Macromolecule #49: 50S ribosomal protein L31

MacromoleculeName: 50S ribosomal protein L31 / type: protein_or_peptide / ID: 49 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 8.300543 KDa
SequenceString:
MKEGIHPKLV PARIICGCGN VIETYSTKPE IYVEVCSKCH PFYTGQQRFV DTEGRVERFQ RRYGDSYRKG R

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Macromolecule #50: 50S ribosomal protein L32

MacromoleculeName: 50S ribosomal protein L32 / type: protein_or_peptide / ID: 50 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 6.72205 KDa
SequenceString:
MAKHPVPKKK TSKARRDARR SHHALTPPTL VPCPECKAMK PPHTVCPECG YYAGRKVLEV

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Macromolecule #51: 50S ribosomal protein L33

MacromoleculeName: 50S ribosomal protein L33 / type: protein_or_peptide / ID: 51 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 6.632896 KDa
SequenceString:
MASEVRLKLL LECTECKRRN YATEKNKRNT PNKLELRKYC PWCRKHTVHR EVKI

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Macromolecule #52: 50S ribosomal protein L34

MacromoleculeName: 50S ribosomal protein L34 / type: protein_or_peptide / ID: 52 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 6.132449 KDa
SequenceString:
MKRTWQPNRR KRAKTHGFRA RMRTPGGRKV LKRRRQKGRW RLTPAVRKR

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Macromolecule #53: 50S ribosomal protein L35

MacromoleculeName: 50S ribosomal protein L35 / type: protein_or_peptide / ID: 53 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 7.506178 KDa
SequenceString:
MPKMKTHKGA KKRVKITASG KVVAMKTGKR HLNWQKSGKE IRQKGRKFVL AKPEAERIKL LLPYE

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Macromolecule #54: 50S ribosomal protein L36

MacromoleculeName: 50S ribosomal protein L36 / type: protein_or_peptide / ID: 54 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (bacteria)
Strain: HB8 / ATCC 27634 / DSM 579
Molecular weightTheoretical: 4.435411 KDa
SequenceString:
MKVRASVKRI CDKCKVIRRH GRVYVICENP KHKQRQG

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Macromolecule #56: Macrolide efflux protein

MacromoleculeName: Macrolide efflux protein / type: protein_or_peptide / ID: 56 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pseudomonas aeruginosa (bacteria)
Molecular weightTheoretical: 55.706461 KDa
Recombinant expressionOrganism: Escherichia coli (E. coli)
SequenceString: MSLIIKARNI RLDYAGRDVL DIDELEIHSY DRIGLVGDNG AGKSSLLKVL NGEIVLAEAT LQRFGDFAHI SQLGGIEIET VEDRAMLSR LGVSNVQNDT MSGGEETRAK IAAAFSQQVH GILADEPTSH LDLNGIDLLI GQLKAFDGAL LVISHDRYFL D MVVDKIWE ...String:
MSLIIKARNI RLDYAGRDVL DIDELEIHSY DRIGLVGDNG AGKSSLLKVL NGEIVLAEAT LQRFGDFAHI SQLGGIEIET VEDRAMLSR LGVSNVQNDT MSGGEETRAK IAAAFSQQVH GILADEPTSH LDLNGIDLLI GQLKAFDGAL LVISHDRYFL D MVVDKIWE LKDGKITEYW GGYSDYLRQK EEERQHQAVE YELMMKERER LESAVQEKRQ QANRLDNKKK GEKSKNSTES AG RLGHAKM TGTKQRKLYQ AAKSMEKRLA ALEDIQAPEH LRSIRFRQSS ALELHNKFPI TADGLSLKFG SRTIFDDANF IIP LGAKVA ITGSNGTGKT SLLKMISERA DGLTISPKAE IGYFTQTGYK FNTHKSVLSF MQEECEYTVA EIRAVLASMG IGAN DIQKN LSDLSGGEII KLLLSKMLLG KYNILLMDEP GNYLDLKSIA ALETMMKSYA GTIIFVSHDK QLVDNIADII YEIKD HKII KTFERDCHHH HHH

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Macromolecule #57: MAGNESIUM ION

MacromoleculeName: MAGNESIUM ION / type: ligand / ID: 57 / Number of copies: 2 / Formula: MG
Molecular weightTheoretical: 24.305 Da

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Macromolecule #58: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER

MacromoleculeName: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER / type: ligand / ID: 58 / Number of copies: 2 / Formula: ANP
Molecular weightTheoretical: 506.196 Da
Chemical component information

ChemComp-ANP:
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER / AMP-PNP, energy-carrying molecule analogue*YM

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Experimental details

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Structure determination

Methodcryo EM
Processingsingle particle reconstruction
Aggregation stateparticle

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Sample preparation

BufferpH: 7.5
Component:
ConcentrationFormulaName
25.0 mMTris-HClTrisTris
100.0 mMNaClSodium chlorideSodium Chloride
350.0 uMBMEBeta Mercaptoethanol
Sugar embeddingMaterial: Ice
GridModel: Quantifoil R2/1 / Material: COPPER / Mesh: 300 / Support film - Material: CARBON / Support film - topology: HOLEY / Support film - Film thickness: 0.2 nm / Pretreatment - Type: GLOW DISCHARGE
VitrificationCryogen name: ETHANE / Chamber humidity: 100 % / Chamber temperature: 277 K / Instrument: FEI VITROBOT MARK I

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Electron microscopy

MicroscopeFEI TITAN KRIOS
Electron beamAcceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN
Electron opticsIllumination mode: OTHER / Imaging mode: BRIGHT FIELDBright-field microscopy / Cs: 2.7 mm
Image recordingFilm or detector model: FEI FALCON II (4k x 4k) / Detector mode: INTEGRATING / Average electron dose: 50.0 e/Å2
Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company

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Image processing

Startup modelType of model: PDB ENTRY
PDB model - PDB ID:
Initial angle assignmentType: ANGULAR RECONSTITUTION
Final angle assignmentType: ANGULAR RECONSTITUTION
Final reconstructionNumber classes used: 15 / Applied symmetry - Point group: C1 (asymmetric) / Resolution.type: BY AUTHOR / Resolution: 3.6 Å / Resolution method: FSC 0.143 CUT-OFF / Software - Name: RELION (ver. 2.0) / Number images used: 127778
FSC plot (resolution estimation)

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Atomic model buiding 1

RefinementSpace: REAL / Protocol: RIGID BODY FIT
Output model

PDB-5zlu:
Ribosome Structure bound to ABC-F protein.

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