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- PDB-1e3i: Mouse class II alcohol dehydrogenase complex with NADH and inhibitor -
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Open data
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Basic information
Entry | Database: PDB / ID: 1e3i | ||||||
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Title | Mouse class II alcohol dehydrogenase complex with NADH and inhibitor | ||||||
![]() | ALCOHOL DEHYDROGENASE, CLASS II | ||||||
![]() | OXIDOREDUCTASE | ||||||
Function / homology | ![]() benzaldehyde dehydrogenase [NAD(P)+] activity / Ethanol oxidation / alcohol catabolic process / quinone metabolic process / ethanol binding / ethanol metabolic process / RA biosynthesis pathway / all-trans-retinol dehydrogenase (NAD+) / all-trans retinal binding / fatty acid omega-oxidation ...benzaldehyde dehydrogenase [NAD(P)+] activity / Ethanol oxidation / alcohol catabolic process / quinone metabolic process / ethanol binding / ethanol metabolic process / RA biosynthesis pathway / all-trans-retinol dehydrogenase (NAD+) / all-trans retinal binding / fatty acid omega-oxidation / S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity / NADPH:quinone reductase activity / formaldehyde catabolic process / cellular aldehyde metabolic process / alcohol dehydrogenase (NAD+) activity / : / all-trans-retinol dehydrogenase (NAD+) activity / retinol metabolic process / aldose reductase (NADPH) activity / retinol binding / NAD binding / zinc ion binding / nucleoplasm / cytosol Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Svensson, S. / Hoog, J.O. / Schneider, G. / Sandalova, T. | ||||||
![]() | ![]() Title: Crystal Structure of Mouse Class II Alcohol Dehydrogenase Reveal Determinants of Substrate Specificity and Catalytic Efficiency Authors: Svensson, S. / Hoeoeg, J.O. / Schneider, G. / Sandalova, T. #1: Journal: J.Biol.Chem. / Year: 1999 Title: A Novel Subtype of Class II Alcohol Dehydrogenase in Rodents Authors: Svensson, S. / Stroemberg, P. / Hoeoeg, J.O. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 160.9 KB | Display | ![]() |
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PDB format | ![]() | 126.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 1e3eC ![]() 1e3lC ![]() 1cdoS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 40094.418 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Chemical | #3: Chemical | #4: Chemical | ChemComp-ZN / #5: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.05 Å3/Da / Density % sol: 39.53 % | ||||||||||||||||||||||||||||||
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Crystal grow | pH: 8.3 / Details: pH 8.30 | ||||||||||||||||||||||||||||||
Crystal grow | *PLUS Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 110 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Date: May 15, 1999 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.042 Å / Relative weight: 1 |
Reflection | Resolution: 2.1→25 Å / Num. obs: 40001 / % possible obs: 99.2 % / Redundancy: 4.3 % / Rsym value: 0.054 / Net I/σ(I): 18.5 |
Reflection shell | Resolution: 2.08→2.12 Å / Rsym value: 0.174 / % possible all: 94.7 |
Reflection | *PLUS Num. measured all: 173749 / Rmerge(I) obs: 0.054 |
Reflection shell | *PLUS % possible obs: 87.1 % / Rmerge(I) obs: 0.213 / Mean I/σ(I) obs: 8.9 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1CDO Resolution: 2.08→25 Å / Cross valid method: THROUGHOUT / σ(F): 0
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Solvent computation | Solvent model: ANISOTROPIC BULK SOLVENT CORRECTION | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 27.1 Å2
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Refinement step | Cycle: LAST / Resolution: 2.08→25 Å
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Refine LS restraints |
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Xplor file |
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Software | *PLUS Name: CNS / Version: 0.9 / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LS refinement shell | *PLUS Rfactor Rfree: 0.26 / Rfactor obs: 0.256 |