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- PDB-1cdo: ALCOHOL DEHYDROGENASE (E.C.1.1.1.1) (EE ISOZYME) COMPLEXED WITH N... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1cdo | ||||||
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Title | ALCOHOL DEHYDROGENASE (E.C.1.1.1.1) (EE ISOZYME) COMPLEXED WITH NICOTINAMIDE ADENINE DINUCLEOTIDE (NAD), AND ZINC | ||||||
![]() | ALCOHOL DEHYDROGENASE | ||||||
![]() | OXIDOREDUCTASE (CH-OH(D)-NAD(A)) / OXIDOREDUCTASE | ||||||
Function / homology | ![]() alcohol dehydrogenase (NAD+) activity / alcohol dehydrogenase / zinc ion binding / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Eklund, H. | ||||||
![]() | ![]() Title: Crystal structure of cod liver class I alcohol dehydrogenase: substrate pocket and structurally variable segments. Authors: Ramaswamy, S. / el Ahmad, M. / Danielsson, O. / Jornvall, H. / Eklund, H. #1: ![]() Title: Structures of Horse Liver Alcohol Dehydrogenase Complexed with Nad+ and Substituted Benzyl Alcohols Authors: Ramaswamy, S. / Eklund, H. / Plapp, B.V. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 165.7 KB | Display | ![]() |
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PDB format | ![]() | 129.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 961.4 KB | Display | ![]() |
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Full document | ![]() | 969.1 KB | Display | |
Data in XML | ![]() | 35.3 KB | Display | |
Data in CIF | ![]() | 52.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Atom site foot note | 1: CIS PROLINE - PRO A 63 / 2: CIS PROLINE - PRO B 63 |
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Components
#1: Protein | Mass: 40049.387 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) ![]() #2: Chemical | ChemComp-ZN / #3: Chemical | #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.38 Å3/Da / Density % sol: 48.3 % | |||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 6.9 / Method: vapor diffusion, hanging drop | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction source | Source: ![]() ![]() ![]() |
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Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: May 1, 1994 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.89 Å / Relative weight: 1 |
Reflection | Num. obs: 39749 / % possible obs: 86.9 % / Redundancy: 2.1 % / Rmerge(I) obs: 0.12 |
Reflection | *PLUS Highest resolution: 2.05 Å / Num. measured all: 83875 / Rmerge(I) obs: 0.12 |
Reflection shell | *PLUS Highest resolution: 2.05 Å / Lowest resolution: 2.08 Å / % possible obs: 73.7 % |
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Processing
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Refinement | Resolution: 2.05→7 Å / σ(F): 0
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Displacement parameters | Biso mean: 11.4 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.05→7 Å
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Refine LS restraints |
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Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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