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- PDB-1e3l: P47H mutant of mouse class II alcohol dehydrogenase complex with NADH -
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Open data
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Basic information
Entry | Database: PDB / ID: 1e3l | ||||||
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Title | P47H mutant of mouse class II alcohol dehydrogenase complex with NADH | ||||||
![]() | ALCOHOL DEHYDROGENASE, CLASS II | ||||||
![]() | ALCOHOL DEHYDROGENASE | ||||||
Function / homology | ![]() benzaldehyde dehydrogenase [NAD(P)+] activity / Ethanol oxidation / alcohol catabolic process / quinone metabolic process / ethanol binding / ethanol metabolic process / RA biosynthesis pathway / all-trans-retinol dehydrogenase (NAD+) / all-trans retinal binding / fatty acid omega-oxidation ...benzaldehyde dehydrogenase [NAD(P)+] activity / Ethanol oxidation / alcohol catabolic process / quinone metabolic process / ethanol binding / ethanol metabolic process / RA biosynthesis pathway / all-trans-retinol dehydrogenase (NAD+) / all-trans retinal binding / fatty acid omega-oxidation / S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity / NADPH:quinone reductase activity / formaldehyde catabolic process / cellular aldehyde metabolic process / alcohol dehydrogenase (NAD+) activity / : / all-trans-retinol dehydrogenase (NAD+) activity / retinol metabolic process / aldose reductase (NADPH) activity / retinol binding / NAD binding / zinc ion binding / nucleoplasm / cytosol Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Svensson, S. / Hoog, J.O. / Schneider, G. / Sandalova, T. | ||||||
![]() | ![]() Title: Crystal Structure of Mouse Class II Alcohol Dehydrogenase Reveal Determinants of Substrate Specificity and Catalytic Efficiency Authors: Svensson, S. / Hoeoeg, J.O. / Schneider, G. / Sandalova, T. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 154.7 KB | Display | ![]() |
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PDB format | ![]() | 121.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 1e3eC ![]() 1e3iC ![]() 1cdoS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 40135.445 Da / Num. of mol.: 2 / Mutation: YES Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Chemical | #3: Chemical | ChemComp-ZN / #4: Water | ChemComp-HOH / | Compound details | CHAIN A, B ENGINEERED | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.04 Å3/Da / Density % sol: 39.79 % | |||||||||||||||||||||||||
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Crystal grow | pH: 8.3 / Details: pH 8.30 | |||||||||||||||||||||||||
Crystal grow | *PLUS Method: vapor diffusion, hanging drop | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 110 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Date: Jan 15, 1999 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.032 Å / Relative weight: 1 |
Reflection | Resolution: 2.5→25 Å / Num. obs: 22033 / % possible obs: 99 % / Redundancy: 3.1 % / Rsym value: 0.068 / Net I/σ(I): 8.2 |
Reflection shell | Resolution: 2.5→2.55 Å / Mean I/σ(I) obs: 3.1 / Rsym value: 0.321 / % possible all: 94 |
Reflection | *PLUS % possible obs: 99 % / Num. measured all: 68302 / Rmerge(I) obs: 0.068 |
Reflection shell | *PLUS % possible obs: 94.7 % / Rmerge(I) obs: 0.278 / Mean I/σ(I) obs: 7.1 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 1CDO Resolution: 2.5→25 Å / Cross valid method: THROUGHOUT / σ(F): 0
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Displacement parameters | Biso mean: 37.5 Å2
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Refinement step | Cycle: LAST / Resolution: 2.5→25 Å
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Refine LS restraints |
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Xplor file |
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Software | *PLUS Name: CNS / Version: 0.9 / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Rfactor Rfree: 0.2598 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LS refinement shell | *PLUS Rfactor Rfree: 0.327 / Rfactor obs: 0.245 |