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Structure paper

TitleBacterial polysaccharide lyase family 33: Specificity from an evolutionarily conserved binding tunnel.
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Vol. 122, Page e2421623122-e2421623122, Year 2025
Publish dateNov 23, 2023 (structure data deposition date)
AuthorsLoiodice, M. / Drula, E. / McIver, Z. / Antonyuk, S. / Basle, A. / Lima, M. / Yates, E.A. / Byrne, D.P. / Coughlan, J. / Leech, A. ...Loiodice, M. / Drula, E. / McIver, Z. / Antonyuk, S. / Basle, A. / Lima, M. / Yates, E.A. / Byrne, D.P. / Coughlan, J. / Leech, A. / Mesdaghi, S. / Rigden, D.J. / Drouillard, S. / Helbert, W. / Henrissat, B. / Terrapon, N. / Wright, G.S.A. / Couturier, M. / Cartmell, A.
External linksProc. Natl. Acad. Sci. USA / PubMed:39932998
MethodsX-ray diffraction
Resolution1.797 - 2.7 Å
Structure data

PDB-8r6z:
Polysaccharide lyase BtPL33HA (BT4410) Apo form 2
Method: X-RAY DIFFRACTION / Resolution: 2.03 Å

PDB-8r70:
Polysaccharide lyase BtPL33HA (BT4410) Y291A with HA dp4
Method: X-RAY DIFFRACTION / Resolution: 1.797 Å

PDB-8r71:
Polysaccharide lyase BtPL33HA (BT4410) Y291A with HAdp4 collected at 1.22 A
Method: X-RAY DIFFRACTION / Resolution: 1.92 Å

PDB-8r72:
Polysaccharide lyase BtPL33HA (BT4410) Y291A with HA dp4 collected at 1.33 A
Method: X-RAY DIFFRACTION / Resolution: 2.58 Å

PDB-8r73:
Polysaccharide lyase BcPL33HA (BcellWH2_04512) Apo form
Method: X-RAY DIFFRACTION / Resolution: 2.11 Å

PDB-8r75:
Polysaccharide lyase BtPL33HA (BT4410) Apo form 1
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-P4K:
polyethylene glycol

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / pH buffer*YM

Source
  • bacteroides thetaiotaomicron vpi-5482 (bacteria)
  • bacteroides cellulosilyticus wh2 (bacteria)
KeywordsLYASE / Polysaccharide lyase / glycosaminoglycan / Hyaluronic acid / conformational change

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