[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 153 items for (author: van & den & berg & b)

EMDB-19986:
Structure of recombinant alpha-synuclein fibrils 1B capable of seeding GCIs in vivo

PDB-9euu:
Structure of recombinant alpha-synuclein fibrils 1B capable of seeding GCIs in vivo

EMDB-16328:
Outer membrane attachment porin OmpM1 from Veillonella parvula

EMDB-16332:
Outer membrane attachment porin OmpM1 from Veillonella parvula, native

EMDB-16333:
Outer membrane attachment porin OmpM1 from Veillonella parvula, C3 symmetry

PDB-8bym:
Outer membrane attachment porin OmpM1 from Veillonella parvula

PDB-8bys:
Outer membrane attachment porin OmpM1 from Veillonella parvula, native

PDB-8byt:
Outer membrane attachment porin OmpM1 from Veillonella parvula, C3 symmetry

EMDB-40334:
Human OCT1 (Apo) in inward-open conformation

EMDB-40335:
Human OCT1 bound to diltiazem in inward-open conformation

EMDB-40336:
Human OCT1 bound to fenoterol in inward-open conformation

EMDB-40337:
Human OCT1 bound to metformin in inward-open conformation

EMDB-40339:
Human OCT1 bound to thiamine in inward-open conformation

PDB-8sc1:
Human OCT1 (Apo) in inward-open conformation

PDB-8sc2:
Human OCT1 bound to diltiazem in inward-open conformation

PDB-8sc3:
Human OCT1 bound to fenoterol in inward-open conformation

PDB-8sc4:
Human OCT1 bound to metformin in inward-open conformation

PDB-8sc6:
Human OCT1 bound to thiamine in inward-open conformation

EMDB-16114:
Vitamin B12 transporter BtuB1 with lipoprotein BtuG1 from B. theta

EMDB-17574:
BtuB3G3 bound to cyanocobalamin with disordered EL8

EMDB-17575:
BtuB3G3 bound to cyanocobalamin with ordered EL8

PDB-8blw:
Vitamin B12 transporter BtuB1 with lipoprotein BtuG1 from B. theta

PDB-8p97:
BtuB3G3 bound to cyanocobalamin with disordered EL8

PDB-8p98:
BtuB3G3 bound to cyanocobalamin with ordered EL8

EMDB-15288:
Substrate-free levan utilisation machinery (utilisome)

EMDB-15289:
Levan utilisation machinery (utilisome) with levan fructo-oligosaccharides DP 8-12

EMDB-15290:
Core SusCD transporter units from the levan utilisome with levan fructo-oligosaccharides DP 8-12

EMDB-15291:
Inactive levan utilisation machinery (utilisome) in the presence of levan fructo-oligosaccharides DP 15-25

EMDB-15292:
Core SusCD transporter units from the inactive levan utilisome in the presence of levan fructo-oligosaccharides DP 15-25

EMDB-15293:
Consensus reconstruction of the dextran utilisation system

PDB-8a9y:
Substrate-free levan utilisation machinery (utilisome)

PDB-8aa0:
Levan utilisation machinery (utilisome) with levan fructo-oligosaccharides DP 8-12

PDB-8aa1:
Core SusCD transporter units from the levan utilisome with levan fructo-oligosaccharides DP 8-12

PDB-8aa2:
Inactive levan utilisation machinery (utilisome) in the presence of levan fructo-oligosaccharides DP 15-25

PDB-8aa3:
Core SusCD transporter units from the inactive levan utilisome in the presence of levan fructo-oligosaccharides DP 15-25

PDB-8aa4:
SusC components of the dextran utilisation system (utilisome)

EMDB-34276:
Cryo-EM structure of CB2-G protein complex

EMDB-34277:
Cryo-EM structure of CP-CB2-G protein complex

EMDB-34278:
Cryo-EM structure of HU-CB2-G protein complex

EMDB-34279:
Cryo-EM structure of LEI-CB2-Gi complex

PDB-8guq:
Cryo-EM structure of CB2-G protein complex

PDB-8gur:
Cryo-EM structure of CP-CB2-G protein complex

PDB-8gus:
Cryo-EM structure of HU-CB2-G protein complex

PDB-8gut:
Cryo-EM structure of LEI-CB2-Gi complex

EMDB-14922:
cryo-EM structure of omicron spike in complex with de novo designed binder, full map

PDB-7zrv:
cryo-EM structure of omicron spike in complex with de novo designed binder, full map

EMDB-14930:
cryo-EM structure of omicron spike in complex with de novo designed binder, local

EMDB-14947:
cryo-EM structure of D614 spike in complex with de novo designed binder, full and local maps(addition)

PDB-7zsd:
cryo-EM structure of omicron spike in complex with de novo designed binder, local

PDB-7zss:
cryo-EM structure of D614 spike in complex with de novo designed binder

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more