[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 191 items for (author: zhou & cc)

EMDB-36466:
FCP trimer in diatom Thalassiosira pseudonana

EMDB-43529:
L5A7 Fab bound to Indonesia2005 Hemagglutinin

EMDB-43545:
L5A7 Fab bound to 28H6E11 anti-idiotype Fab

PDB-8vue:
L5A7 Fab bound to Indonesia2005 Hemagglutinin

PDB-8vuz:
L5A7 Fab bound to 28H6E11 anti-idiotype Fab

EMDB-44496:
Cryo-EM co-structure of AcrB with the CU032 efflux pump inhibitor

EMDB-44500:
Cryo-EM co-structure of AcrB with the EPM35 efflux pump inhibitor

EMDB-44501:
Cryo-EM co-structure of AcrB with the CU232 efflux pump inhibitor

EMDB-44506:
Cryo-EM co-structure of AcrB with CU244

EMDB-41374:
Antibody N3-1 bound to RBDs in the up and down conformations

EMDB-41382:
Antibody N3-1 bound to RBD in the up conformation

EMDB-41399:
Antibody N3-1 bound to SARS-CoV-2 spike

PDB-8tm1:
Antibody N3-1 bound to RBDs in the up and down conformations

PDB-8tma:
Antibody N3-1 bound to RBD in the up conformation

EMDB-41144:
Cryo-EM Structure of GPR61-G protein complex stabilized by scFv16

EMDB-41145:
Cryo-EM Structure of GPR61-

PDB-8tb0:
Cryo-EM Structure of GPR61-G protein complex stabilized by scFv16

PDB-8tb7:
Cryo-EM Structure of GPR61-

EMDB-29530:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment

EMDB-29531:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment

EMDB-40240:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment

PDB-8fxb:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment

PDB-8fxc:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment

PDB-8s9g:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment

EMDB-33883:
Structural basis of human PRPS2 filaments

EMDB-34226:
SARS-CoV-2 BA.2 spike RBD in complex bound with VacBB-551

EMDB-34935:
Cryo-EM structure of a SIN3/HDAC complex from budding yeast

EMDB-34936:
Cryo-EM map of the Rpd3L complex from the Rxt1-Flag dataset

EMDB-34937:
Cryo-EM map of the Rpd3L complex in Sin3 part

EMDB-34938:
Cryo-EM map of the Rpd3L complex in Dep1 region

EMDB-34939:
Cryo-EM map of the Rpd3L complex in Ume1 part

EMDB-27139:
Cryo-EM structure of the VRC321 clinical trial, vaccine-elicited, human antibody 1B06 in complex with a stabilized NC99 HA trimer

PDB-8d21:
Cryo-EM structure of the VRC321 clinical trial, vaccine-elicited, human antibody 1B06 in complex with a stabilized NC99 HA trimer

EMDB-27243:
Cryo-EM map of MORF-WHs in complex with 197bp nucleosome aided by scFv

EMDB-26044:
H10ssF: ferritin-based nanoparticle displaying H10 hemagglutinin stabilized stem epitopes

EMDB-32497:
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (focused refinement on Fab-RBD)

EMDB-32498:
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (3U)

EMDB-32499:
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (2u1d)

EMDB-26028:
Structure of Enterobacter cloacae Cap2-CdnD02 2:2 complex

EMDB-26066:
Structure of Enterobacter cloacae Cap2-CdnD02 2:1 complex

PDB-7to3:
Structure of Enterobacter cloacae Cap2-CdnD02 2:2 complex

PDB-7tqd:
Structure of Enterobacter cloacae Cap2-CdnD02 2:1 complex

EMDB-32541:
Structural basis for ligand binding modes of CTP synthase

EMDB-32542:
Structural basis for ligand binding modes of CTP synthase

EMDB-28558:
SARS-CoV-2 BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment (local refinement of the RBD and S2X324)

EMDB-28559:
SARS-CoV-2 Omicron BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment

PDB-8erq:
SARS-CoV-2 BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment (local refinement of the RBD and S2X324)

PDB-8err:
SARS-CoV-2 Omicron BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment

EMDB-24693:
SARS-CoV-2-6P-Mut7 S protein (C3 symmetry)

EMDB-24694:
SARS-CoV-2-6P-Mut7 S protein (asymmetric)

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more