[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,863 items for (author: zheng & q)

EMDB-65963:
In situ subtomogram average of 80S ribosome (local refined with LSU mask)
Method: subtomogram averaging / : Yang Q, Huang XJ, Zhang XZ

EMDB-68807:
Cryo-EM structure of human apoferritin at 1.81 Angstrom resolution(using CR-BIS data collection on Falcon4).
Method: single particle / : Yang Q, Huang XJ, Zhang XZ

EMDB-68808:
Cryo-EM structure of human apoferritin at 1.79 Angstrom resolution(using BIS data collection on Falcon4).
Method: single particle / : Yang Q, Huang XJ, Zhang XZ

EMDB-68809:
Cryo-EM structure of human apoferritin at 1.64 Angstrom resolution(using CR-BIS data collection on Falcon4i).
Method: single particle / : Yang Q, Huang XJ, Zhang XZ

EMDB-68810:
Cryo-EM structure of human apoferritin at 1.65 Angstrom resolution(using BIS data collection on Falcon4i).
Method: single particle / : Yang Q, Huang XJ, Zhang XZ

EMDB-68811:
Cryo-EM structure of human apoferritin at 2.05 Angstrom resolution(using CR-BIS data collection on K3).
Method: single particle / : Yang Q, Huang XJ, Zhang XZ

EMDB-68812:
Cryo-EM structure of human apoferritin at 2.05 Angstrom resolution(using BIS data collection on K3).
Method: single particle / : Yang Q, Huang XJ, Zhang XZ

EMDB-68813:
Subtomogram average structure of human apoferritin at 2.21 Angstrom resolution(using CR-BIS data collection on K3).
Method: subtomogram averaging / : Yang Q, Huang XJ, Zhang XZ

EMDB-68814:
Subtomogram average structure of human apoferritin at 2.28 Angstrom resolution(using BIS data collection on K3).
Method: subtomogram averaging / : Yang Q, Huang XJ, Zhang XZ

EMDB-68815:
Subtomogram average structure of human apoferritin at 1.98 Angstrom resolution(using CR-BIS data collection on Falcon4i).
Method: subtomogram averaging / : Yang Q, Huang XJ, Zhang XZ

EMDB-68816:
Subtomogram average structure of human apoferritin at 2.01 Angstrom resolution(using BIS data collection on Falcon4i).
Method: subtomogram averaging / : Yang Q, Huang XJ, Zhang XZ

EMDB-68817:
Subtomogram average structure of human apoferritin at 2.24 Angstrom resolution(using CR-BIS data collection on Falcon4).
Method: subtomogram averaging / : Yang Q, Huang XJ, Zhang XZ

EMDB-68818:
Subtomogram average structure of human apoferritin at 2.34 Angstrom resolution(using BIS data collection on Falcon4).
Method: subtomogram averaging / : Yang Q, Huang XJ, Zhang XZ

EMDB-63485:
The consensus map of HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

EMDB-75431:
The cryoEM structure of T10 type2 nanofiber
Method: helical / : Zhang H, Yang Y

EMDB-75434:
The CryoEM structure of T12 type1 nanofiber
Method: helical / : Zhang H, Yang Y

EMDB-75435:
The CryoEM structure of T12 type2 nanofiber
Method: helical / : Zhang H, Yang Y

PDB-10sd:
The cryoEM structure of T10 type2 nanofiber
Method: helical / : Zhang H, Yang Y

PDB-10sg:
The CryoEM structure of T12 type1 nanofiber
Method: helical / : Zhang H, Yang Y

PDB-10sh:
The CryoEM structure of T12 type2 nanofiber
Method: helical / : Zhang H, Yang Y

EMDB-65029:
Wild-type VCP in complex with small molecular inhibitor NMS-873
Method: single particle / : Pan M, Zheng Q, Liu L

EMDB-65037:
Recombinantly expressed VCP containing the A232E mutation
Method: single particle / : Pan M, Zheng Q, Liu L

EMDB-65483:
In situ Tspan-7 spiral structure in retraction fiber
Method: helical / : Jia X, Wang DJ, Li XP, Liu N, Yu L, Wang HW

EMDB-65033:
Recombinantly expressed wild-type VCP
Method: single particle / : Pan M, Zheng Q, Liu L

EMDB-65035:
Recombinantly expressed VCP containing the R155H mutation
Method: single particle / : Pan M, Zheng Q, Liu L

EMDB-66051:
Local refinement region of SARS-CoV-2 spike RBD in complex with antibodies CT1-5.
Method: single particle / : Jiang Y, Sun H, Zheng Q, Li S

PDB-9wla:
Local refinement region of SARS-CoV-2 spike RBD in complex with antibodies CT1-5.
Method: single particle / : Jiang Y, Sun H, Zheng Q, Li S

EMDB-66052:
Local refinement region of SARS-CoV-2 spike RBD in complex with antibodies S309 and CT1-1.
Method: single particle / : Jiang Y, Sun H, Zheng Q, Li S

PDB-9wlb:
Local refinement region of SARS-CoV-2 spike RBD in complex with antibodies S309 and CT1-1.
Method: single particle / : Jiang Y, Sun H, Zheng Q, Li S

EMDB-65049:
Structure of SARS-CoV-2 Spike in complex with antibodies S309 and CT1-1
Method: single particle / : Jiang Y, Yu Z, Zheng Q, Li S

EMDB-65044:
Structure of SARS-CoV-2 Spike in complex with antibodies S309 and CT1-5.
Method: single particle / : Jiang Y, Sun H, Zheng Q, Li S

EMDB-65253:
Cryo-EM structure of human urate transporter GLUT9 bound to a selective inhibitor SG4
Method: single particle / : Pan X, Shen Z, Luo Z

EMDB-68919:
Cryo-EM structure of human ATR-ATRIP complex with ATPgammaS and Chk1
Method: single particle / : Wang L, Wang M, Zhao L, Rao Q, Wu H, Ma B, Wang J, Zheng J, Li Y, Xu Y, Guo J, Cheng J, Qiao S

PDB-23fc:
Cryo-EM structure of human ATR-ATRIP complex with ATPgammaS and Chk1
Method: single particle / : Wang L, Wang M, Zhao L, Rao Q, Wu H, Ma B, Wang J, Zheng J, Li Y, Xu Y, Guo J, Cheng J, Qiao S

EMDB-68217:
Gi bound kappa-opioid receptor in complex with difelikefalin
Method: single particle / : Zhang H, Wang R, Shi P, He X, Zhu Q, Xu Y, Yuan Q, Hu W, Wu K, Zheng Y, Zhou L, Liang J, Lv P, Xu Z, Zhuang Y, Xu H, Wang Y, Tian C

PDB-22es:
Gi bound kappa-opioid receptor in complex with difelikefalin
Method: single particle / : Zhang H, Wang R, Shi P, He X, Zhu Q, Xu Y, Yuan Q, Hu W, Wu K, Zheng Y, Zhou L, Liang J, Lv P, Xu Z, Zhuang Y, Xu H, Wang Y, Tian C

EMDB-68208:
Gi bound kappa-opioid receptor in complex with beta01
Method: single particle / : Zhang H, Wang R, Shi P, He X, Zhu Q, Xu Y, Yuan Q, Hu W, Wu K, Zheng Y, Zhou L, Liang J, Lv P, Xu Z, Zhuang Y, Xu H, Wang Y, Tian C

PDB-22em:
Gi bound kappa-opioid receptor in complex with beta01
Method: single particle / : Zhang H, Wang R, Shi P, He X, Zhu Q, Xu Y, Yuan Q, Hu W, Wu K, Zheng Y, Zhou L, Liang J, Lv P, Xu Z, Zhuang Y, Xu H, Wang Y, Tian C

EMDB-64462:
Cryo-EM structure of the Prohibitin complex from Chaetomium thermophilum
Method: single particle / : Luo DY, Zheng LQ, Lu MA, Chen ZY, Wang PP, Guo Q, Gao N

PDB-9urz:
Cryo-EM structure of the Prohibitin complex from Chaetomium thermophilum
Method: single particle / : Luo DY, Zheng LQ, Lu MA, Chen ZY, Wang PP, Guo Q, Gao N

EMDB-63446:
The head region of HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

EMDB-63447:
The head-arm region of HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

EMDB-63448:
The hinge-arm region of HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

EMDB-63449:
HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

PDB-9lwi:
The head region of HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

PDB-9lwj:
The head-arm region of HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

PDB-9lwk:
The hinge-arm region of HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

PDB-9lwl:
HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

EMDB-65569:
Cryo-EM structure of DDB1-CRBN in complex with dHuR-2 and HuR
Method: single particle / : Dou H, Zhu Y

PDB-9w2f:
Cryo-EM structure of DDB1-CRBN in complex with dHuR-2 and HuR
Method: single particle / : Dou H, Zhu Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more