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Showing all 47 items for (author: yonemochi & m)

PDB-9m55:
Structural insight into determinants of endogenous agonist selectivity of aminergic receptors from octopamine b2 receptor structure
Method: single particle / : Hori T, Katsuta K, Shirouzu M

PDB-9m57:
Structural insight into determinants of endogenous agonist selectivity of aminergic receptors from octopamine b2 receptor structure
Method: single particle / : Hori T, Katsura K, Shirouzu M

EMDB-63636:
Octopamine receptor b2 with bound DPMF
Method: single particle / : Hori T, Katsuta K, Shirouzu M

EMDB-63638:
octopamine b2 receptor with bound octopamine
Method: single particle / : Hori T, Katsuta K, Shirouzu M

EMDB-63464:
DOCK5/ELMO1 complex with RhoG and Rac1 on lipid membrane
Method: single particle / : Shinoda T, Katsura K, Kukimoto-Niino M, Shirouzu M

EMDB-63477:
DOCK5/ELMO1 complex with RhoG and Rac1 on lipid membrane
Method: single particle / : Shinoda T, Katsura K, Kukimoto-Niino M, Shirouzu M

PDB-9lx0:
DOCK5/ELMO1 complex with RhoG and Rac1 on lipid membrane
Method: single particle / : Shinoda T, Katsura K, Kukimoto-Niino M, Shirouzu M

PDB-9lxh:
DOCK5/ELMO1 complex with RhoG and Rac1 on lipid membrane
Method: single particle / : Shinoda T, Katsura K, Kukimoto-Niino M, Shirouzu M

EMDB-38466:
Cryo-EM structure of the RhoG/DOCK5/ELMO1/Rac1 complex: RhoG/DOCK5/ELMO1 focused map
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-60136:
Cryo-EM structure of the RhoG/DOCK5/ELMO1/Rac1 complex
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-60146:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 1)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-60147:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 2)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-60148:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 3)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-60149:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 4)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-60150:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 5)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

PDB-8xm7:
Cryo-EM structure of the RhoG/DOCK5/ELMO1/Rac1 complex: RhoG/DOCK5/ELMO1 focused map
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

PDB-8zj2:
Cryo-EM structure of the RhoG/DOCK5/ELMO1/Rac1 complex
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

PDB-8zji:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 1)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

PDB-8zjj:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 2)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

PDB-8zjk:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 3)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

PDB-8zjl:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 4)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

PDB-8zjm:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 5)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-36271:
Cryo-EM structure of the DOCK5/ELMO1 complex, focused on one protomer
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

PDB-8jhk:
Cryo-EM structure of the DOCK5/ELMO1 complex, focused on one protomer
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-30802:
Cryo-EM structure of the human ELMO1-DOCK5-Rac1 complex
Method: single particle / : Kukimoto-Niino M, Katsura K, Kaushik R, Ehara H, Yokoyama T, Uchikubo-Kamo T, Mishima-Tsumagari C, Yonemochi M, Ikeda M, Hanada K, Zhang KYJ, Shirouzu M

PDB-7dpa:
Cryo-EM structure of the human ELMO1-DOCK5-Rac1 complex
Method: single particle / : Kukimoto-Niino M, Katsura K, Kaushik R, Ehara H, Yokoyama T, Uchikubo-Kamo T, Mishima-Tsumagari C, Yonemochi M, Ikeda M, Hanada K, Zhang KYJ, Shirouzu M

EMDB-30568:
eIF2B-eIF2(aP), aPg complex
Method: single particle / : Kashiwagi K, Ito T

EMDB-30569:
eIF2B-eIF2(aP), aP2 complex
Method: single particle / : Kashiwagi K, Ito T

EMDB-30570:
eIF2B-eIF2(aP), aP1 complex
Method: single particle / : Kashiwagi K, Ito T

EMDB-30571:
eIF2B apo
Method: single particle / : Kashiwagi K, Ito T

PDB-7d43:
eIF2B-eIF2(aP), aPg complex
Method: single particle / : Kashiwagi K, Ito T

PDB-7d44:
eIF2B-eIF2(aP), aP2 complex
Method: single particle / : Kashiwagi K, Ito T

PDB-7d45:
eIF2B-eIF2(aP), aP1 complex
Method: single particle / : Kashiwagi K, Ito T

PDB-7d46:
eIF2B apo
Method: single particle / : Kashiwagi K, Ito T

PDB-6k71:
eIF2 - eIF2B complex
Method: single particle / : Kashiwagi K, Yokoyama T, Ito T

PDB-6k72:
eIF2(aP) - eIF2B complex
Method: single particle / : Kashiwagi K, Yokoyama T, Ito T

EMDB-9699:
Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure i)
Method: single particle / : Yokohama T, Shigematsu H, Shirouzu M, Imataka H, Ito T

EMDB-9701:
Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
Method: single particle / : Yokoyama T, Shigematsu H, Shirouzu M, Imataka H, Ito T

EMDB-9702:
Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
Method: single particle / : Yokoyama T, Shigematsu H, Shirouzu M, Imataka H, Ito T

EMDB-9703:
Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
Method: single particle / : Yokoyama T, Shigematsu H, Shirouzu M, Imataka H, Ito T

EMDB-9704:
Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome, rotated (Structure v)
Method: single particle / : Yokoyama T, Shigematsu H, Shirouzu M, Imataka H, Ito T

PDB-6ip5:
Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
Method: single particle / : Yokoyama T, Shigematsu H, Shirouzu M, Imataka H, Ito T

PDB-6ip6:
Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
Method: single particle / : Yokoyama T, Shigematsu H, Shirouzu M, Imataka H, Ito T

PDB-6ip8:
Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
Method: single particle / : Yokoyama T, Shigematsu H, Shirouzu M, Imataka H, Ito T

EMDB-9840:
eIF2 - eIF2B complex
Method: single particle / : Kashiwagi K, Yokoyama T, Ito T

EMDB-9841:
eIF2(aP) - eIF2B complex
Method: single particle / : Kashiwagi K, Yokoyama T, Ito T

EMDB-9842:
eIF2 - eIF2B (2 molecule)
Method: single particle / : Kashiwagi K, Yokoyama T, Ito T

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

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Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

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Jul 5, 2019. Downlodablable text data

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Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

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Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

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