[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 8,113 items for (author: xu & f)

EMDB-79039:
Australian bat lyssavirus glycoprotein PH domain in complex with broadly neutralizing human antibodies A6 and RVC20
Method: single particle / : Xu K, Xu Y

PDB-38pm:
Australian bat lyssavirus glycoprotein PH domain in complex with broadly neutralizing human antibodies A6 and RVC20
Method: single particle / : Xu K, Xu Y

EMDB-65307:
Structure of Cdr1 with Tacrolimus
Method: single particle / : Wang Z, Yang S, Zhang B, Yu X

EMDB-65308:
Structure of Cdr1 with curcumin
Method: single particle / : Wang Z, Yang S, Zhang B, Yu X

EMDB-65309:
Structure of Cdr1 with beauvericin
Method: single particle / : Wang Z, Yang S, Zhang B, Yu X

EMDB-65311:
Structure of Cdr1 with Fluconazole at the near site
Method: single particle / : Wang Z, Yang S, Zhang B, Yu X

EMDB-65312:
Structure of Cdr1 with ATP/ADP
Method: single particle / : Wang Z, Yang S, Zhang B, Yu X

EMDB-65313:
Structure of Cdr1 with Fluconazole at the middle site
Method: single particle / : Wang Z, Yang S, Zhang B, Yu X

EMDB-65335:
Structure of Cdr1 with AMPPNP
Method: single particle / : Wang Z, Yang S, Zhang B, Yu X

EMDB-65336:
Structure of Cdr1 with AMPPNP and the far site Fluconazole
Method: single particle / : Wang Z, Yang S, Zhang B, Yu X

EMDB-65337:
Structure of Cdr1 with AMPPNP/AMPPNP
Method: single particle / : Wang Z, Yang S, Zhang B, Yu X

EMDB-68246:
Structure of apo Cdr1
Method: single particle / : Wang Z, Yang S, Zhang B, Yu X

PDB-22fr:
Structure of apo Cdr1
Method: single particle / : Wang Z, Yang S, Zhang B, Yu X

PDB-9vsu:
Structure of Cdr1 with Tacrolimus
Method: single particle / : Wang Z, Yang S, Zhang B, Yu X

PDB-9vsv:
Structure of Cdr1 with curcumin
Method: single particle / : Wang Z, Yang S, Zhang B, Yu X

PDB-9vsw:
Structure of Cdr1 with beauvericin
Method: single particle / : Wang Z, Yang S, Zhang B, Yu X

PDB-9vsz:
Structure of Cdr1 with Fluconazole at the near site
Method: single particle / : Wang Z, Yang S, Zhang B, Yu X

PDB-9vt1:
Structure of Cdr1 with ATP/ADP
Method: single particle / : Wang Z, Yang S, Zhang B, Yu X

PDB-9vt2:
Structure of Cdr1 with Fluconazole at the middle site
Method: single particle / : Wang Z, Yang S, Zhang B, Yu X

PDB-9vtm:
Structure of Cdr1 with AMPPNP
Method: single particle / : Wang Z, Yang S, Zhang B, Yu X

PDB-9vtn:
Structure of Cdr1 with AMPPNP and the far site Fluconazole
Method: single particle / : Wang Z, Yang S, Zhang B, Yu X

PDB-9vto:
Structure of Cdr1 with AMPPNP/AMPPNP
Method: single particle / : Wang Z, Yang S, Zhang B, Yu X

EMDB-54986:
Closed conformation dome complex including the Sec-translocon (SecYEG-SecA-SecDF) in untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

EMDB-54988:
Open conformation dome complex including the Sec-translocon (SecYEG-SecA-SecDF) in untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

EMDB-55029:
Ribosome-dome complex including the Sec-translocon (SecYEG-SecA-SecDF) from antibiotics treated Mycoplasma pneumoniae cells (Combined)
Method: subtomogram averaging / : Xue L, Jensen RK, Mahamid J

EMDB-68583:
Cryo EM structure of SARS-COV-2 (BA.4) RBD in complex with THZ937 Fab (local refine)
Method: single particle / : Wang X, Guo F

PDB-22pd:
Cryo EM structure of SARS-COV-2 (BA.4) RBD in complex with THZ937 Fab (local refine)
Method: single particle / : Wang X, Guo F

EMDB-66823:
Cryo-EM structure of the Bavachalcone bound FFAR4-Giq complex
Method: single particle / : Zhu S, Wang Z

EMDB-66824:
Cryo-EM structure of the Bavachalcone bound GPR120-Giq complex (local refinement)
Method: single particle / : Zhu S, Wang Z

PDB-9xfi:
Cryo-EM structure of the Bavachalcone bound FFAR4-Giq complex
Method: single particle / : Zhu S, Wang Z

PDB-9xfj:
Cryo-EM structure of the Bavachalcone bound GPR120-Giq complex (local refinement)
Method: single particle / : Zhu S, Wang Z

EMDB-54989:
Open conformation dome complex including the Sec-translocon (SecYEG-SecA-SecDF) with inward-facing SecDF from untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

EMDB-54990:
Open conformation dome complex including the Sec-translocon (SecYEG-SecA-SecDF) with inward-facing SecDF and substrate from untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

EMDB-54991:
Closed conformation dome complex including the Sec-translocon in the minor SecA conformation (SecYEG-SecA-SecDF) in untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

EMDB-54992:
Open conformation dome complex including the Sec-translocon (SecYEG-SecDF) from untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

EMDB-54993:
Open conformation dome complex including the Sec-translocon (SecYEG-SecA-SecDF) from untreated Mycoplasma pneumoniae cell
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

EMDB-55013:
Multibody refinement of pooled Ribosome-Sec translocon-Dome supercomplexes from four antibiotic treated Mycoplasma pneumoniae datasets, body 3/3
Method: subtomogram averaging / : Xue L, Jensen R, Mahamid J

EMDB-55014:
Multibody refinement of pooled Ribosome-Sec translocon-Dome supercomplexes from four antibiotic treated Mycoplasma pneumoniae datasets, body 2/3
Method: subtomogram averaging / : Xue L, Jensen R, Mahamid J

EMDB-55016:
Multibody refinement of pooled Ribosome-Sec translocon-Dome supercomplexes from four antibiotic treated Mycoplasma pneumoniae datasets, body 1/3
Method: subtomogram averaging / : Xue L, Jensen R, Mahamid J

EMDB-55018:
Ribosome-Sec translocon-Dome supercomplex in chloramphenicol treated Mycoplasma pneumoniae cells imaged on K3 camera
Method: subtomogram averaging / : Xue L, Jensen RK, Mahamid J

EMDB-55020:
Ribosome-Sec translocon-Dome supercomplex in spectinomycin treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Jensen R, Mahamid J

EMDB-55021:
Ribosome-Sec translocon-Dome supercomplex in puseudoridimycin treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Jensen RK, Mahamid J

EMDB-55022:
Ribosome-Sec translocon-Dome supercomplex in chloramphenicol treated Mycoplasma pneumoniae cells by K2 camera
Method: subtomogram averaging / : Xue L, Jensen RK, Mahamid J

EMDB-55023:
Ribosome-Sec translocon-Dome supercomplex in native untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Jensen RK, Mahamid J

EMDB-75585:
Cryo-EM structure of a bovine CLC-K S68N/R355K chloride channel
Method: single particle / : Chien CT, Chiu W, Maduke M

EMDB-75586:
Cryo-EM structure of a bovine CLC-K S68N/R355K chloride channel with inhibitor M-BIM1
Method: single particle / : Chien CT, Chiu W, Maduke M

EMDB-75588:
Cryo-EM structure of a bovine CLC-K S68N/R355K chloride channel with inhibitor M-BIM15
Method: single particle / : Chien CT, Chiu W, Maduke M

EMDB-75590:
Cryo-EM structure of a bovine CLC-K S68N/R355K chloride channel with 100 mM Ca2+
Method: single particle / : Chien CT, Chiu W, Maduke M

PDB-11ah:
Cryo-EM structure of a bovine CLC-K S68N/R355K chloride channel
Method: single particle / : Chien CT, Chiu W, Maduke M

PDB-11ai:
Cryo-EM structure of a bovine CLC-K S68N/R355K chloride channel with inhibitor M-BIM1
Method: single particle / : Chien CT, Chiu W, Maduke M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more