[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 27 items for (author: xiaoning & l)

EMDB-61458:
Structure of cargo complex (BtpeA-BtaeB-BtapC) bound to the VgrG spike from the Type VI secretion system
Method: single particle / : Zheng SN, Li WX, Chen Z, Gao X

PDB-9jg8:
Structure of cargo complex (BtpeA-BtaeB-BtapC) bound to the VgrG spike from the Type VI secretion system
Method: single particle / : Zheng SN, Li WX, Chen Z, Gao X

EMDB-62143:
SARS-CoV-2 related bat coronavirus BANAL-52 spike in the locked state
Method: single particle / : Li QQ, Cai X, Li XN, Zhang YB, Li R, Kang ZR, Wan DD, Wang JX, Yang JX, Shi JX, Jin SL, Peng Y, Zang N, Xie ZK, Wan YS, Shang J

PDB-9k6z:
SARS-CoV-2 related bat coronavirus BANAL-52 spike in the locked state
Method: single particle / : Li QQ, Cai X, Li XN, Zhang YB, Li R, Kang ZR, Wan DD, Wang JX, Yang JX, Shi JX, Jin SL, Peng Y, Zang N, Xie ZK, Wan YS, Shang J

EMDB-62145:
SARS-CoV-2 related bat coronavirus BANAL-103 spike in the closed state
Method: single particle / : Qingqing L, Xiao C, Xiaoning L, Yibing Z, Ru L, Zirui K, Didi W, Jiaxu W, Lili L, Junxia Y, Jianxiang S, Shuiling J, Ying P, Na Z, Yushun W, Jian S

PDB-9k75:
SARS-CoV-2 related bat coronavirus BANAL-103 spike in the closed state
Method: single particle / : Qingqing L, Xiao C, Xiaoning L, Yibing Z, Ru L, Zirui K, Didi W, Jiaxu W, Lili L, Junxia Y, Jianxiang S, Shuiling J, Ying P, Na Z, Yushun W, Jian S

EMDB-60744:
Cryo-EM structure of the complex of DNA, Ku70/80, and laXLF.
Method: single particle / : Liang S

PDB-9iol:
Cryo-EM structure of the complex of DNA, Ku70/80, and laXLF.
Method: single particle / : Liang S

EMDB-22108:
HIV-1 Envelope Glycoprotein BG505 SOSIP.664 expressed in HEK293F cells in complex with RM20A3 Fab
Method: single particle / : Berndsen ZT, Ward AB

EMDB-22109:
HIV-1 Envelope Glycoprotein BG505 SOSIP.664 expressed in stable CHO cells in complex with RM20A3 Fab
Method: single particle / : Berndsen ZT, Ward AB

EMDB-22110:
HIV-1 Envelope Glycoprotein BG505 SOSIP.664 expressed in HEK293S cells in complex with RM20A3 Fab
Method: single particle / : Berndsen ZT, Ward AB

EMDB-22111:
HIV-1 Envelope Glycoprotein BG505 SOSIP.664, expressed in HEK293S cells and partially deglycosylated by endoglycosidase H, in complex with RM20A3 Fab
Method: single particle / : Berndsen ZT, Ward AB

EMDB-22112:
HIV-1 Envelope Glycoprotein BG505 SOSIP.664, expressed in HEK293S cells and deglycosylated by endoglycosidase H, in complex with RM20A3 Fab
Method: single particle / : Berndsen ZT, Ward AB

PDB-6x9r:
HIV-1 Envelope Glycoprotein BG505 SOSIP.664 expressed in HEK293F cells in complex with RM20A3 Fab
Method: single particle / : Berndsen ZT, Ward AB

PDB-6x9s:
HIV-1 Envelope Glycoprotein BG505 SOSIP.664 expressed in stable CHO cells in complex with RM20A3 Fab
Method: single particle / : Berndsen ZT, Ward AB

PDB-6x9t:
HIV-1 Envelope Glycoprotein BG505 SOSIP.664 expressed in HEK293S cells in complex with RM20A3 Fab
Method: single particle / : Berndsen ZT, Ward AB

PDB-6x9u:
HIV-1 Envelope Glycoprotein BG505 SOSIP.664, expressed in HEK293S cells and partially deglycosylated by endoglycosidase H, in complex with RM20A3 Fab
Method: single particle / : Berndsen ZT, Ward AB

PDB-6x9v:
HIV-1 Envelope Glycoprotein BG505 SOSIP.664, expressed in HEK293S cells and deglycosylated by endoglycosidase H, in complex with RM20A3 Fab
Method: single particle / : Berndsen ZT, Ward AB

EMDB-22352:
Structure of SARS-CoV-2 3Q-2P full-length prefusion spike trimer (C3 symmetry)
Method: single particle / : Bangaru S, Turner HL, Ozorowski G, Antanasijevic A, Ward AB

EMDB-22353:
Structure of SARS-CoV-2 3Q-2P full-length prefusion trimer (C1 symmetry)
Method: single particle / : Bangaru S, Turner HL, Ozorowski G, Antanasijevic A, Ward AB

EMDB-22354:
Structure of SARS-CoV-2 3Q-2P full-length dimers of spike trimers
Method: single particle / : Bangaru S, Turner HL, Ozorowski G, Antanasijevic A, Ward AB

EMDB-22355:
Structure of SARS-CoV-2 3Q-2P full-length trimer of spike trimers
Method: single particle / : Bangaru S, Turner HL, Ozorowski G, Antanasijevic A, Ward AB

EMDB-22356:
Structure of SARS-CoV-2 3Q full-length prefusion trimer
Method: single particle / : Bangaru S, Turner HL, Ozorowski G, Antanasijevic A, Ward AB

PDB-7jji:
Structure of SARS-CoV-2 3Q-2P full-length prefusion spike trimer (C3 symmetry)
Method: single particle / : Bangaru S, Turner HL, Ozorowski G, Antanasijevic A, Ward AB

PDB-7jjj:
Structure of SARS-CoV-2 3Q-2P full-length dimers of spike trimers
Method: single particle / : Bangaru S, Turner HL, Ozorowski G, Antanasijevic A, Ward AB

EMDB-9542:
Zika virus complexed with a neutralizing antibody Z23-Fab
Method: single particle / : Gao GF, Shi Y, Peng R

PDB-5gzr:
Zika virus E protein complexed with a neutralizing antibody Z23-Fab
Method: single particle / : Gao GG, Shi Y, Peng R, Liu S

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more