[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 66 items for (author: williamson & le)

EMDB-43658:
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43659:
SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43660:
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vye:
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vyf:
SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vyg:
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-16512:
MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle
Method: single particle / : Bufton JC, Capin J, Boruku U, Garzoni F, Schaffitzel C, Berger I

EMDB-16522:
Structure of ADDoCoV-ADAH11
Method: single particle / : Yadav KNS, Buzas D, Berger-Schaffitzel C, Berger I

PDB-8c9n:
MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle
Method: single particle / : Bufton JC, Capin J, Boruku U, Garzoni F, Schaffitzel C, Berger I

EMDB-27808:
RSV F trimer bound to RSV-199 Fab
Method: single particle / : Wen X, Jardetzky TS

EMDB-27846:
HMPV F monomer bound to RSV-199 Fab
Method: single particle / : Wen X, Jardetzky TS

EMDB-27990:
HMPV F complex with 4I3 Fab
Method: single particle / : Wen X, Jardetzky TS

EMDB-27995:
HMPV F dimer bound to RSV-199 Fab
Method: single particle / : Wen X, Jardetzky TS

PDB-8afz:
Architecture of the ESCPE-1 membrane coat
Method: subtomogram averaging / : Lopez-Robles C, Scaramuzza S, Astorga-Simon E, Ishida M, Williamsom CD, Banos-Mateos S, Gil-Carton D, Romero M, Vidaurrazaga A, Fernandez-Recio J, Rojas AL, Bonifacino JS, Castano-Diez D, Hierro A

EMDB-16540:
Neurofascin isoform NF155 extracellular domain
Method: single particle / : McKie SJ, Deane JE, Butt BG

EMDB-26945:
Cryo-EM structure of SINV/EEEV in complex with Fab fragment of a moderately/weakly neutralizing human antibody IgG-21
Method: single particle / : Bandyopadhyay A, Klose T, Kuhn RJ

EMDB-26946:
Cryo-EM structure of SINV/EEEV in complex with Fab fragment of a moderately/weakly neutralizing human antibody IgG-94
Method: single particle / : Bandyopadhyay A, Klose T, Kuhn RJ

EMDB-26947:
Cryo-EM structure of SINV/EEEV in complex with Fab fragment of a potently neutralizing human antibody IgG-106
Method: single particle / : Bandyopadhyay A, Klose T, Kuhn RJ

PDB-7v0n:
Cryo-EM structure of SINV/EEEV in complex with Fab fragment of a moderately/weakly neutralizing human antibody IgG-21
Method: single particle / : Bandyopadhyay A, Klose T, Kuhn RJ

PDB-7v0o:
Cryo-EM structure of SINV/EEEV in complex with Fab fragment of a moderately/weakly neutralizing human antibody IgG-94
Method: single particle / : Bandyopadhyay A, Klose T, Kuhn RJ

PDB-7v0p:
Cryo-EM structure of SINV/EEEV in complex with Fab fragment of a potently neutralizing human antibody IgG-106
Method: single particle / : Bandyopadhyay A, Klose T, Kuhn RJ

EMDB-14717:
SARS CoV Spike protein, Closed C3 conformation
Method: single particle / : Toelzer C, Gupta K, Yadav SKN, Buzas D, Borucu U, Schaffitzel C, Berger I

EMDB-14718:
SARS CoV Spike protein, Closed C1 conformation
Method: single particle / : Toelzer C, Gupta K, Yadav SKN, Buzas D, Borucu U, Schaffitzel C, Berger I

EMDB-14724:
SARS CoV Spike protein, Open conformation
Method: single particle / : Toelzer C, Gupta K, Yadav SKN, Buzas D, Borucu U, Schaffitzel C, Berger I

PDB-7zh1:
SARS CoV Spike protein, Closed C3 conformation
Method: single particle / : Toelzer C, Gupta K, Yadav SKN, Buzas D, Borucu U, Schaffitzel C, Berger I

PDB-7zh2:
SARS CoV Spike protein, Closed C1 conformation
Method: single particle / : Toelzer C, Gupta K, Yadav SKN, Buzas D, Borucu U, Schaffitzel C, Berger I

PDB-7zh5:
SARS CoV Spike protein, Open conformation
Method: single particle / : Toelzer C, Gupta K, Yadav SKN, Buzas D, Borucu U, Schaffitzel C, Berger I

EMDB-25102:
CryoEM structure of Venezuelan Equine Encephalitis virus (VEEV) TC-83 strain VLP
Method: single particle / : Binshtein E, Crowe JE

EMDB-25103:
CryoEM structure of Venezuelan Equine Encephalitis virus (VEEV) TC-83 strain VLP in complex with Fab hVEEV-63
Method: single particle / : Binshtein E, Crowe JE

EMDB-25104:
CryoEM structure of Venezuelan Equine Encephalitis virus (VEEV) TC-83 strain VLP in complex with Fab hVEEV-63 (focus refine of the asymmetric unit)
Method: single particle / : Binshtein E, Crowe JE

PDB-7sfu:
CryoEM structure of Venezuelan Equine Encephalitis virus (VEEV) TC-83 strain VLP
Method: single particle / : Binshtein E, Crowe JE

PDB-7sfv:
CryoEM structure of Venezuelan Equine Encephalitis virus (VEEV) TC-83 strain VLP in complex with Fab hVEEV-63
Method: single particle / : Binshtein E, Crowe JE

PDB-7sfw:
CryoEM structure of Venezuelan Equine Encephalitis virus (VEEV) TC-83 strain VLP in complex with Fab hVEEV-63 (focus refine of the asymmetric unit)
Method: single particle / : Binshtein E, Crowe JE

EMDB-22839:
BDBV-289 bound to EBOV GPdMuc Makona
Method: single particle / : Murin CD, Ward AB

PDB-7kej:
BDBV-289 bound to EBOV GPdMuc Makona
Method: single particle / : Murin CD, Ward AB

EMDB-22841:
Bundibugyo virus GP (mucin deleted) bound to antibody Fab BDBV-43 and ADI-15878
Method: single particle / : Murin CD, Ward AB

EMDB-22842:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-293
Method: single particle / : Murin CD, Ward AB

EMDB-22847:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-296 and EBOV-515
Method: single particle / : Murin CD, Ward AB

EMDB-22848:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-442 and EBOV-515
Method: single particle / : Murin CD, Ward AB

EMDB-22851:
Bundibugyo virus GP (mucin deleted) bound to antibody Fab BDBV-329 and EBOV-515
Method: single particle / : Murin CD, Ward AB

EMDB-22852:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-237 and EBOV-515
Method: single particle / : Murin CD, Ward AB

EMDB-22853:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-437 and EBOV-515
Method: single particle / : Murin CD, Ward AB

PDB-7kew:
Bundibugyo virus GP (mucin deleted) bound to antibody Fab BDBV-43
Method: single particle / : Murin CD, Ward AB

PDB-7kex:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-293
Method: single particle / : Murin CD, Ward AB

PDB-7kf9:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-296 and EBOV-515
Method: single particle / : Murin CD, Ward AB

PDB-7kfb:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-442
Method: single particle / : Murin CD, Ward AB

PDB-7kfe:
Bundibugyo virus GP (mucin deleted) bound to antibody Fab BDBV-329
Method: single particle / : Murin CD, Ward AB

PDB-7kfh:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-437
Method: single particle / : Murin CD, Ward AB

EMDB-22188:
CryoEM structure of Chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-143 Antibody
Method: single particle / : Williamson LE, Gilliland T, Yadav PK, Binshtein E, Bombardi R, Kose N, Nargi RS, Sutton RM, Armstrong E, Carnahan RH, Walker LM, Kim AS, Fox J, Diamond MS, Ohi M, Klimstra WB, Crowe JE

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more