[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 101 items for (author: walsh & ca)

EMDB-72735:
HIV-1 Env Q23 NFL TD CC3+ in complex with NHP Q9 V2-apex polyclonal antibody Fabs isolated post-2 immunizations
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-72736:
HIV-1 Env Q23 NFL TD CC3+ in complex with NHP Q10 V2-apex polyclonal antibody Fabs isolated post-2 immunizations
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-72737:
HIV-1 Env Q23 NFL TD CC3+ in complex with NHP Q12 V2-apex polyclonal antibody Fabs isolated post-2 immunizations
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-72738:
HIV-1 Env 16055 NFL TD CC2+ in complex with pooled NHP Q8-Q9-Q12 V2-apex polyclonal antibody Fabs isolated post-4 immunizations
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-72739:
HIV-1 Env BG505 NFL TD CC3+ in complex with pooled NHP Q8-Q9-Q12 V2-apex polyclonal antibody Fabs isolated post-4 immunizations
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70340:
FH_302_07 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70341:
FH_302_14 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70342:
FH_302_23 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70343:
BG505 MD39.3-CC5 SOSIP in complex with V1V3 epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70344:
BG505 MD39.3-CC5 SOSIP in complex with gp41-base epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70345:
BG505 MD39.3-CC5 SOSIP in complex with C3V5 epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-44246:
Cryo-EM structure of HIV-1 JRFL v6 Env in complex with vaccine-elicited, Membrane Proximal External Region (MPER) directed antibody DH1317.4.
Method: single particle / : Acharya P, Parsons R, Janowska K, Williams WB, Alam M, Haynes BF

EMDB-42149:
S1V2-72 Fab bound to EHA2 from influenza B/Malaysia/2506/2004
Method: single particle / : Finney J, Kong S, Walsh Jr RM, Harrison SC, Kelsoe G

PDB-8udg:
S1V2-72 Fab bound to EHA2 from influenza B/Malaysia/2506/2004
Method: single particle / : Finney J, Kong S, Walsh Jr RM, Harrison SC, Kelsoe G

EMDB-24982:
One RBD-up 1 of pre-fusion SARS-CoV-2 Delta variant spike protein
Method: single particle / : Zhang J, Xiao TS

EMDB-24988:
One RBD-up 2 of pre-fusion SARS-CoV-2 Gamma variant spike protein
Method: single particle / : Zhang J, Xiao TS

PDB-7sbl:
One RBD-up 1 of pre-fusion SARS-CoV-2 Delta variant spike protein
Method: single particle / : Zhang J, Xiao TS, Cai YF, Peng HQ, Volloch SR, Chen B

PDB-7sbt:
One RBD-up 2 of pre-fusion SARS-CoV-2 Gamma variant spike protein
Method: single particle / : Zhang J, Xiao TS, Cai YF, Peng HQ, Volloch SR, Chen B

EMDB-24981:
Closed state of pre-fusion SARS-CoV-2 Delta variant spike protein
Method: single particle / : Zhang J, Xiao TS

EMDB-24983:
One RBD-up 2 of pre-fusion SARS-CoV-2 Delta variant spike protein
Method: single particle / : Zhang J, Xiao TS

EMDB-24984:
Closed state of pre-fusion SARS-CoV-2 Kappa variant spike protein
Method: single particle / : Zhang J, Xiao TS

EMDB-24985:
One RBD-up 1 of pre-fusion SARS-CoV-2 Kappa variant spike protein
Method: single particle / : Zhang J, Xiao TS

EMDB-24986:
One RBD-up 2 of pre-fusion SARS-CoV-2 Kappa variant spike protein
Method: single particle / : Zhang J, Xiao TS

EMDB-24987:
One RBD-up 1 of pre-fusion SARS-CoV-2 Gamma variant spike protein
Method: single particle / : Zhang J, Xiao TS

PDB-7sbk:
Closed state of pre-fusion SARS-CoV-2 Delta variant spike protein
Method: single particle / : Zhang J, Xiao TS, Cai YF, Peng HQ, Volloch SR, Chen B

PDB-7sbo:
One RBD-up 2 of pre-fusion SARS-CoV-2 Delta variant spike protein
Method: single particle / : Zhang J, Xiao TS, Cai YF, Peng HQ, Volloch SR, Chen B

PDB-7sbp:
Closed state of pre-fusion SARS-CoV-2 Kappa variant spike protein
Method: single particle / : Zhang J, Xiao TS, Cai YF, Peng HQ, Volloch SR, Chen B

PDB-7sbq:
One RBD-up 1 of pre-fusion SARS-CoV-2 Kappa variant spike protein
Method: single particle / : Zhang J, Xiao TS, Cai YF, Peng HQ, Volloch SR, Chen B

PDB-7sbr:
One RBD-up 2 of pre-fusion SARS-CoV-2 Kappa variant spike protein
Method: single particle / : Zhang J, Xiao TS, Cai YF, Peng HQ, Volloch SR, Chen B

PDB-7sbs:
One RBD-up 1 of pre-fusion SARS-CoV-2 Gamma variant spike protein
Method: single particle / : Zhang J, Xiao TS, Cai YF, Peng HQ, Volloch SR, Chen B

EMDB-24121:
Structural basis for enhanced infectivity and immune evasion of SARS-CoV-2 variants
Method: single particle / : Zhang J, Cai YF

EMDB-24122:
Structural basis for enhanced infectivity and immune evasion of SARS-CoV-2 variants
Method: single particle / : Zhang J, Cai YF

EMDB-24123:
Structural basis for enhanced infectivity and immune evasion of SARS-CoV-2 variants
Method: single particle / : Zhang J, Cai YF

EMDB-24124:
Structural basis for enhanced infectivity and immune evasion of SARS-CoV-2 variants
Method: single particle / : Zhang J, Cai YF

EMDB-24125:
Structural basis for enhanced infectivity and immune evasion of SARS-CoV-2 variants
Method: single particle / : Zhang J, Cai YF

EMDB-24126:
Structural basis for enhanced infectivity and immune evasion of SARS-CoV-2 variants
Method: single particle / : Zhang J, Cai YF

EMDB-24127:
Structural basis for enhanced infectivity and immune evasion of SARS-CoV-2 variants
Method: single particle / : Zhang J, Cai YF

PDB-7n1q:
Structural basis for enhanced infectivity and immune evasion of SARS-CoV-2 variants
Method: single particle / : Zhang J, Cai YF, Xiao TS, Rawson S, Peng HQ, Sterling SM, Walsh Jr RM, Volloch SR, Chen B

PDB-7n1t:
Structural basis for enhanced infectivity and immune evasion of SARS-CoV-2 variants
Method: single particle / : Zhang J, Cai YF, Xiao TS, Rawson S, Peng HQ, Sterling SM, Walsh Jr RM, Volloch SR, Chen B

PDB-7n1u:
Structural basis for enhanced infectivity and immune evasion of SARS-CoV-2 variants
Method: single particle / : Zhang J, Cai YF, Xiao TS, Rawson S, Peng HQ, Sterling SM, Walsh Jr RM, Volloch SR, Chen B

PDB-7n1v:
Structural basis for enhanced infectivity and immune evasion of SARS-CoV-2 variants
Method: single particle / : Zhang J, Cai YF, Xiao TS, Rawson S, Peng HQ, Sterling SM, Walsh Jr RM, Volloch SR, Chen B

PDB-7n1w:
Structural basis for enhanced infectivity and immune evasion of SARS-CoV-2 variants
Method: single particle / : Zhang J, Cai YF, Xiao TS, Rawson S, Peng HQ, Sterling SM, Walsh Jr RM, Volloch SR, Chen B

PDB-7n1x:
Structural basis for enhanced infectivity and immune evasion of SARS-CoV-2 variants
Method: single particle / : Zhang J, Cai YF, Xiao TS, Rawson S, Peng HQ, Sterling SM, Walsh Jr RM, Volloch SR, Chen B

PDB-7n1y:
Structural basis for enhanced infectivity and immune evasion of SARS-CoV-2 variants
Method: single particle / : Zhang J, Cai YF, Xiao TS, Rawson S, Peng HQ, Sterling SM, Walsh Jr RM, Volloch SR, Chen B

EMDB-23010:
Structural impact on SARS-CoV-2 spike protein by D614G substitution
Method: single particle / : Zhang J, Cai YF

PDB-7krq:
Structural impact on SARS-CoV-2 spike protein by D614G substitution
Method: single particle / : Zhang J, Cai YF, Xiao TS, Lu JM, Peng HQ, Sterling SM, Walsh Jr RM, Volloch SR, Zhu HS, Woosley AN, Yang W, Sliz P, Chen B

EMDB-23011:
Structural impact on SARS-CoV-2 spike protein by D614G substitution
Method: single particle / : Zhang J, Cai YF

EMDB-23012:
Structural impact on SARS-CoV-2 spike protein by D614G substitution
Method: single particle / : Zhang J, Cai YF

PDB-7krr:
Structural impact on SARS-CoV-2 spike protein by D614G substitution
Method: single particle / : Zhang J, Cai YF, Xiao TS, Lu JM, Peng HQ, Sterling SM, Walsh Jr RM, Volloch SR, Zhu HS, Woosley AN, Yang W, Sliz P, Chen B

PDB-7krs:
Structural impact on SARS-CoV-2 spike protein by D614G substitution
Method: single particle / : Zhang J, Cai YF, Xiao TS, Lu JM, Peng HQ, Sterling SM, Walsh Jr RM, Volloch SR, Zhu HS, Woosley AN, Yang W, Sliz P, Chen B

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more