[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 481 items for (author: victor & ak)

EMDB-75514:
Structure of amplified aSyn filament by using seed amplification assay (SAA) from MSA patient CSF.
Method: helical / : Banerjee V, Wang F, Baker ML, Serysheva II, Soto C

PDB-10xu:
Structure of amplified aSyn filament by using seed amplification assay (SAA) from MSA patient CSF.
Method: helical / : Banerjee V, Wang F, Baker ML, Serysheva II, Soto C

EMDB-44474:
HIV-1 Env 16055 dGly4 NFL
Method: single particle / : Ozorowski G, Lee WH, Ward AB

PDB-9be9:
HIV-1 Env 16055 dGly4 NFL
Method: single particle / : Ozorowski G, Lee WH, Ward AB

EMDB-70353:
Clone 2.1 Fab in complex with chicken IgY CH2 domain (local refinement)
Method: single particle / : Ozorowski G, Alkutkar T, Ward AB

PDB-9odb:
Clone 2.1 Fab in complex with chicken IgY CH2 domain (local refinement)
Method: single particle / : Ozorowski G, Alkutkar T, Ward AB

EMDB-46908:
Recombinant AD-fold Paired Helical Filament Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-46915:
Recombinant AD-fold Quadruple Helical Filament Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-44013:
F-actin-Talin(R13-DD) complex
Method: helical / : Biertumpfel C, Yamada Y, Mizuno N

EMDB-48238:
F-actin-Talin(R13-DD) complex, half-decorated
Method: helical / : Biertumpfel C, Yamada Y, Mizuno N

EMDB-48243:
F-actin-Talin(R13-DD) complex, single-decorated
Method: helical / : Biertumpfel C, Yamada Y, Mizuno N

EMDB-46748:
The Structure of AAV5 at 4 Degrees
Method: single particle / : Bennett AB, McKenna R

EMDB-46749:
The Structure of AAV5 at 55 Degrees Celsius
Method: single particle / : Bennett AB, McKenna R

PDB-9dcb:
The Structure of AAV5 at 4 Degrees
Method: single particle / : Bennett AB, McKenna R

PDB-9dcc:
The Structure of AAV5 at 55 Degrees Celsius
Method: single particle / : Bennett AB, McKenna R

EMDB-46745:
AAV5 at 80 Degree Celsius
Method: single particle / : McKenna R, Bennett A, Gliwa K

PDB-9dc7:
AAV5 at 80 Degree Celsius
Method: single particle / : McKenna R, Bennett A, Gliwa K

EMDB-46870:
Recombinant AD PHF
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-46885:
AD-fold Tri Helical Filament Polymorph
Method: helical / : Vaquer-Alicea J, Kunach P, Diamond MI

EMDB-46909:
Recombinant AD-fold Paired Helical Filament II Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-46911:
Recombinant AD-fold Triple Helical Filament Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-46855:
Cryo-EM structure of NLRP3 complex with Compound C
Method: single particle / : Matico R, Grauwen K, Van Gool M, Muratore EM, Yu X, Abdiaj I, Adhikary S, Adriaensen I, Aranzazu GM, Alcazar J, Bassi M, Brisse E, Canellas S, Chaudhuri S, Chauhan D, Delgado F, Dieguez-Vazquez A, Du Jardin M, Eastham V, Finley M, Jacobs T, Keustermans K, Kuhn R, Llaveria J, Leenaerts J, Linares ML, Martin ML, Martinez C, Miller R, Munoz FM, Nooyens A, Perez LB, Perrier M, Pietrak B, Serre J, Sharma S, Somers M, Suarez J, Tresadern G, Trabanco AA, Van den Bulck D, Van Hauwermeiren F, Varghese T, Vega JA, Youssef SA, Edwards MJ, Oehlrich D, Van Opdenbosch N

PDB-9dh3:
Cryo-EM structure of NLRP3 complex with Compound C
Method: single particle / : Matico R, Grauwen K, Van Gool M, Muratore EM, Yu X, Abdiaj I, Adhikary S, Adriaensen I, Aranzazu GM, Alcazar J, Bassi M, Brisse E, Canellas S, Chaudhuri S, Chauhan D, Delgado F, Dieguez-Vazquez A, Du Jardin M, Eastham V, Finley M, Jacobs T, Keustermans K, Kuhn R, Llaveria J, Leenaerts J, Linares ML, Martin ML, Martinez C, Miller R, Munoz FM, Nooyens A, Perez LB, Perrier M, Pietrak B, Serre J, Sharma S, Somers M, Suarez J, Tresadern G, Trabanco AA, Van den Bulck D, Van Hauwermeiren F, Varghese T, Vega JA, Youssef SA, Edwards MJ, Oehlrich D, Van Opdenbosch N

EMDB-45167:
Cryo-EM structure of E. coli AmpG
Method: single particle / : Sverak H, Worrall LJ, Strynadka NCJ

PDB-9c3f:
Cryo-EM structure of E. coli AmpG
Method: single particle / : Sverak H, Worrall LJ, Strynadka NCJ

EMDB-50170:
Stalled ribosome with Mbf1 N-terminus
Method: single particle / : Denk T, Beckmann R

EMDB-50171:
Collided ribosome with Mbf1 C-terminus
Method: single particle / : Denk T, Beckmann R

EMDB-50259:
Yeast SDD1 Disome with Mbf1
Method: single particle / : Denk T, Beckmann R

PDB-9f9s:
Yeast SDD1 Disome with Mbf1
Method: single particle / : Denk T, Beckmann R

EMDB-47092:
Recombinant Truncated Tau 266-391 fibrillized in NaCl Second Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-46937:
Recombinant Truncated Tau 266-391 fibrillized in NaCl
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-43225:
DH270.6 Fab bound to the HIV-1 CH848 DE3 SOSIP
Method: single particle / : Henderson R, Acharya P

EMDB-43228:
VRC01 Fab bound to the HIV-1 CH848 DE3 SOSIP
Method: single particle / : Henderson R, Acharya P

EMDB-43231:
CH235.12 Fab bound to the HIV-1 CH505.M5 SOSIP
Method: single particle / : Henderson R, Acharya P

EMDB-43232:
CH235.12 Fab bound to the HIV-1 CH505.M5 SOSIP
Method: single particle / : Henderson R, Acharya P

EMDB-43233:
CH505.M5.G458Y CE2 Design SOSIP
Method: single particle / : Henderson R, Acharya P

PDB-8vgv:
DH270.6 Fab bound to the HIV-1 CH848 DE3 SOSIP
Method: single particle / : Henderson R, Acharya P

PDB-8vgw:
VRC01 Fab bound to the HIV-1 CH848 DE3 SOSIP
Method: single particle / : Henderson R, Acharya P

PDB-8vh1:
CH235.12 Fab bound to the HIV-1 CH505.M5 SOSIP
Method: single particle / : Henderson R, Acharya P

PDB-8vh2:
CH235.12 Fab bound to the HIV-1 CH505.M5 SOSIP
Method: single particle / : Henderson R, Acharya P

PDB-8vh3:
CH505.M5.G458Y CE2 Design SOSIP
Method: single particle / : Henderson R, Acharya P

EMDB-19525:
Nipah virus (NiV) fusion protein in complex with neutralizing Fab92
Method: single particle / : Avanzato VA, Stass R, Duyvesteyn HME, Bowden TA

PDB-8rvn:
Nipah virus (NiV) fusion protein in complex with neutralizing Fab92
Method: single particle / : Avanzato VA, Stass R, Duyvesteyn HME, Bowden TA

EMDB-18842:
Cryo-EM structure of 1-deoxy-D-xylulose 5-phosphate synthase (DXPS) from Plasmodium falciparum
Method: single particle / : Gawriljuk VO, Godoy AS, Oerlemans R, Groves MR

EMDB-41605:
Protonated state of NorA at pH 5.0
Method: single particle / : Li JP, Li Y, Koide A, Kuang HH, Torres VJ, Koide S, Wang DN, Traaseth NJ

EMDB-41606:
NorA double mutant - E222QD307N at pH 7.5
Method: single particle / : Li JP, Li Y, Koide A, Kuang HH, Torres VJ, Koide S, Wang DN, Traaseth NJ

EMDB-41607:
NorA single mutant - E222Q at pH 7.5
Method: single particle / : Li JP, Li Y, Koide A, Kuang HH, Torres VJ, Koide S, Wang DN, Traaseth NJ

EMDB-41608:
NorA single mutant - D307N at pH 7.5
Method: single particle / : Li JP, Li Y, Koide A, Kuang HH, Torres VJ, Koide S, Wang DN, Traaseth NJ

PDB-8tte:
Protonated state of NorA at pH 5.0
Method: single particle / : Li JP, Li Y, Koide A, Kuang HH, Torres VJ, Koide S, Wang DN, Traaseth NJ

PDB-8ttf:
NorA double mutant - E222QD307N at pH 7.5
Method: single particle / : Li JP, Li Y, Koide A, Kuang HH, Torres VJ, Koide S, Wang DN, Traaseth NJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more