[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 504 items for (author: victor & ak)

EMDB-54181:
Consensus map of heptameric Rep40-dsDNA (ITR) in presence of ATPyS
Method: single particle / : Rouse SL, Bubeck D, Barritt JD, Xu V, Wake M

EMDB-54182:
Focused map of 3 subunits of Rep40 +dsDNA (ITR) in complex with ATPgS
Method: single particle / : Rouse SL, Bubeck D, Barritt JD, Xu V, Wake M

EMDB-54183:
Focused map of 4 subunits of heptameric Rep40-dsDNA (ITR) in complex with ATPgS
Method: single particle / : Rouse SL, Bubeck D, Barritt JD, Xu V, Wake M

EMDB-54403:
Consensus map of Hexameric AAV2 Rep40-dsDNA (ITR) duplex complex in presence of ATPyS
Method: single particle / : Rouse SL, Bubeck D, Barritt JD, Xu V, Wake M

EMDB-54985:
Subtomogram average of nucleosomes extracted from vitreous sections of Drosophila melanogaster embryos
Method: subtomogram averaging / : Fatmaoui F, Iusupova A, Grewe D, Taiki F, Leforestier A, Eltsov M

EMDB-75514:
Structure of amplified aSyn filament by using seed amplification assay (SAA) from MSA patient CSF.
Method: helical / : Banerjee V, Wang F, Baker ML, Serysheva II, Soto C

PDB-10xu:
Structure of amplified aSyn filament by using seed amplification assay (SAA) from MSA patient CSF.
Method: helical / : Banerjee V, Wang F, Baker ML, Serysheva II, Soto C

EMDB-54050:
Hexameric AAV2 Rep40-ssDNA (ITR) complex in presence of ATPyS
Method: single particle / : Rouse SL, Bubeck D, Barritt JD, Xu V, Wake M

EMDB-54184:
Heptameric AAV2 Rep40-dsDNA (ITR) complex in presence of ATPgS
Method: single particle / : Rouse SL, Bubeck D, Barritt JD, Xu V, Wake M

EMDB-54195:
AAV8 capsid in complex with Rep40 and ADP
Method: single particle / : Rouse SL, Bubeck D, Barritt JD, Xu V, Wake M

EMDB-54328:
Pentameric AAV2 Rep40 in complex with AAV8
Method: single particle / : Rouse SL, Bubeck D, Barritt JD, Xu V, Wake M

EMDB-54416:
Hexameric AAV2 Rep40-dsDNA (ITR) melting complex in presence of ATPyS
Method: single particle / : Rouse SL, Bubeck D, Barritt JD, Xu V, Wake M

EMDB-54429:
Hexameric AAV2 Rep40-dsDNA (ITR) duplex complex in presence of ATPyS
Method: single particle / : Rouse SL, Bubeck D, Barritt JD, Xu V, Wake M

PDB-9rm5:
Hexameric AAV2 Rep40-ssDNA (ITR) complex in presence of ATPyS
Method: single particle / : Rouse SL, Bubeck D, Barritt JD, Xu V, Wake M

PDB-9rqt:
Heptameric AAV2 Rep40-dsDNA (ITR) complex in presence of ATPgS
Method: single particle / : Rouse SL, Bubeck D, Barritt JD, Xu V, Wake M

PDB-9rrs:
AAV8 capsid in complex with Rep40 and ADP
Method: single particle / : Rouse SL, Bubeck D, Barritt JD, Xu V, Wake M

PDB-9rwg:
Pentameric AAV2 Rep40 in complex with AAV8
Method: single particle / : Rouse SL, Bubeck D, Barritt JD, Xu V, Wake M

PDB-9s0n:
Hexameric AAV2 Rep40-dsDNA (ITR) melting complex in presence of ATPyS
Method: single particle / : Rouse SL, Bubeck D, Barritt JD, Xu V, Wake M

PDB-9s10:
Hexameric AAV2 Rep40-dsDNA (ITR) duplex complex in presence of ATPyS
Method: single particle / : Rouse SL, Bubeck D, Barritt JD, Xu V, Wake M

EMDB-44474:
HIV-1 Env 16055 dGly4 NFL
Method: single particle / : Ozorowski G, Lee WH, Ward AB

PDB-9be9:
HIV-1 Env 16055 dGly4 NFL
Method: single particle / : Ozorowski G, Lee WH, Ward AB

EMDB-52201:
Cryo-EM structure of CDK2-cyclin A bound to a GMNC peptide
Method: single particle / : de Martin Garrido N, Ord M, Cushing VI, Greber BJ, Pryciak PM, Davey NE

EMDB-52204:
Cryo-EM structure of CDK2-cyclin A bound to a SAMHD1 peptide
Method: single particle / : de Martin Garrido N, Ord M, Cushing VI, Greber BJ, Pryciak PM, Davey NE

EMDB-52208:
Cryo-EM structure of CDK2-cyclin A bound to a SCAPER peptide
Method: single particle / : de Martin Garrido N, Ord M, Cushing VI, Greber BJ, Pryciak PM, Davey NE

PDB-9hiu:
Cryo-EM structure of CDK2-cyclin A bound to a GMNC peptide
Method: single particle / : de Martin Garrido N, Ord M, Cushing VI, Greber BJ, Pryciak PM, Davey NE

PDB-9hiw:
Cryo-EM structure of CDK2-cyclin A bound to a SAMHD1 peptide
Method: single particle / : de Martin Garrido N, Ord M, Cushing VI, Greber BJ, Pryciak PM, Davey NE

PDB-9hj1:
Cryo-EM structure of CDK2-cyclin A bound to a SCAPER peptide
Method: single particle / : de Martin Garrido N, Ord M, Cushing VI, Greber BJ, Pryciak PM, Davey NE

EMDB-70353:
Clone 2.1 Fab in complex with chicken IgY CH2 domain (local refinement)
Method: single particle / : Ozorowski G, Alkutkar T, Ward AB

PDB-9odb:
Clone 2.1 Fab in complex with chicken IgY CH2 domain (local refinement)
Method: single particle / : Ozorowski G, Alkutkar T, Ward AB

EMDB-46908:
Recombinant AD-fold Paired Helical Filament Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-46915:
Recombinant AD-fold Quadruple Helical Filament Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-44013:
F-actin-Talin(R13-DD) complex
Method: helical / : Biertumpfel C, Yamada Y, Mizuno N

EMDB-48238:
F-actin-Talin(R13-DD) complex, half-decorated
Method: helical / : Biertumpfel C, Yamada Y, Mizuno N

EMDB-48243:
F-actin-Talin(R13-DD) complex, single-decorated
Method: helical / : Biertumpfel C, Yamada Y, Mizuno N

EMDB-46748:
The Structure of AAV5 at 4 Degrees
Method: single particle / : Bennett AB, McKenna R

EMDB-46749:
The Structure of AAV5 at 55 Degrees Celsius
Method: single particle / : Bennett AB, McKenna R

PDB-9dcb:
The Structure of AAV5 at 4 Degrees
Method: single particle / : Bennett AB, McKenna R

PDB-9dcc:
The Structure of AAV5 at 55 Degrees Celsius
Method: single particle / : Bennett AB, McKenna R

EMDB-46745:
AAV5 at 80 Degree Celsius
Method: single particle / : McKenna R, Bennett A, Gliwa K

PDB-9dc7:
AAV5 at 80 Degree Celsius
Method: single particle / : McKenna R, Bennett A, Gliwa K

EMDB-46870:
Recombinant AD PHF
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-46885:
AD-fold Tri Helical Filament Polymorph
Method: helical / : Vaquer-Alicea J, Kunach P, Diamond MI

EMDB-46909:
Recombinant AD-fold Paired Helical Filament II Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-46911:
Recombinant AD-fold Triple Helical Filament Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-45167:
Cryo-EM structure of E. coli AmpG
Method: single particle / : Sverak H, Worrall LJ, Strynadka NCJ

PDB-9c3f:
Cryo-EM structure of E. coli AmpG
Method: single particle / : Sverak H, Worrall LJ, Strynadka NCJ

EMDB-50170:
Stalled ribosome with Mbf1 N-terminus
Method: single particle / : Denk T, Beckmann R

EMDB-50171:
Collided ribosome with Mbf1 C-terminus
Method: single particle / : Denk T, Beckmann R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more