[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 129 items for (author: swan & ja)

EMDB-46041:
Cryo-EM structure of DA03E17 Fab in complex with influenza virus neuraminidase from A/California/07/2009 (H1N1)
Method: single particle / : Jo G, Ward AB

EMDB-46042:
Cryo-EM structure of DA03E17 Fab in complex with influenza virus neuraminidase from A/Kansas/14/2017 (H3N2)
Method: single particle / : Jo G, Ward AB

EMDB-46043:
Cryo-EM structure of influenza virus neuraminidase from A/Kansas/14/2017 (H3N2)
Method: single particle / : Jo G, Ward AB

EMDB-46044:
Cryo-EM structure of DA03E17 Fab in complex with influenza virus neuraminidase from B/Colorado/06/2017
Method: single particle / : Jo G, Ward AB

EMDB-46045:
Cryo-EM structure of 1G01 IgG in complex with influenza virus neuraminidase from A/Kansas/14/2017 (H3N2)
Method: single particle / : Jo G, Han J, Torres JL, Ferguson JA, Ward AB

EMDB-46046:
Cryo-EM structure of FNI9 IgG in complex with influenza virus neuraminidase from A/Kansas/14/2017 (H3N2)
Method: single particle / : Jo G, Han J, Torres JL, Ferguson JA, Ward AB

EMDB-70108:
Cryo-EM structure of CR12042 Fab in complex with influenza virus neuraminidase from A/California/07/2009 (H1N1)
Method: single particle / : Jo G, Ward AB

EMDB-70109:
Cryo-EM structure of CR12044 Fab in complex with influenza virus neuraminidase from A/California/07/2009 (H1N1)
Method: single particle / : Jo G, Ward AB

EMDB-70110:
Cryo-EM structure of AF9C-GL Fab in complex with influenza virus neuraminidase from A/California/07/2009 (H1N1)
Method: single particle / : Jo G, Ward AB

EMDB-70111:
Cryo-EM structure of Z1A11-GL Fab in complex with influenza virus neuraminidase from A/California/07/2009 (H1N1)
Method: single particle / : Jo G, Ward AB

PDB-9cye:
Cryo-EM structure of DA03E17 Fab in complex with influenza virus neuraminidase from A/California/07/2009 (H1N1)
Method: single particle / : Jo G, Ward AB

PDB-9cyf:
Cryo-EM structure of DA03E17 Fab in complex with influenza virus neuraminidase from A/Kansas/14/2017 (H3N2)
Method: single particle / : Jo G, Ward AB

PDB-9cyg:
Cryo-EM structure of influenza virus neuraminidase from A/Kansas/14/2017 (H3N2)
Method: single particle / : Jo G, Ward AB

PDB-9cyh:
Cryo-EM structure of DA03E17 Fab in complex with influenza virus neuraminidase from B/Colorado/06/2017
Method: single particle / : Jo G, Ward AB

PDB-9cyi:
Cryo-EM structure of 1G01 IgG in complex with influenza virus neuraminidase from A/Kansas/14/2017 (H3N2)
Method: single particle / : Jo G, Han J, Torres JL, Ferguson JA, Ward AB

PDB-9cyj:
Cryo-EM structure of FNI9 IgG in complex with influenza virus neuraminidase from A/Kansas/14/2017 (H3N2)
Method: single particle / : Jo G, Han J, Torres JL, Ferguson JA, Ward AB

PDB-9o4n:
Cryo-EM structure of CR12042 Fab in complex with influenza virus neuraminidase from A/California/07/2009 (H1N1)
Method: single particle / : Jo G, Ward AB

PDB-9o4o:
Cryo-EM structure of CR12044 Fab in complex with influenza virus neuraminidase from A/California/07/2009 (H1N1)
Method: single particle / : Jo G, Ward AB

PDB-9o4p:
Cryo-EM structure of AF9C-GL Fab in complex with influenza virus neuraminidase from A/California/07/2009 (H1N1)
Method: single particle / : Jo G, Ward AB

PDB-9o4q:
Cryo-EM structure of Z1A11-GL Fab in complex with influenza virus neuraminidase from A/California/07/2009 (H1N1)
Method: single particle / : Jo G, Ward AB

EMDB-70469:
BG505 MD39.3 SOSIP.664 in complex with 3BC315, BG18 and VRC01 Fabs
Method: single particle / : Ozorowski G, Phulera S, Ward AB

EMDB-70470:
BG505 MD39.3 Env gp151 MPER nanodisc in complex with 10E8, BG18 and VRC01 Fabs (2x 10E8 Fabs)
Method: single particle / : Rantalainen K, Ozorowski G, Gharpure A, Ward AB

EMDB-70471:
BG505 MD39.3 Env gp151 MPER nanodisc in complex with 10E8, BG18 and VRC01 Fabs (1x 10E8 Fab)
Method: single particle / : Rantalainen K, Ozorowski G, Gharpure A, Ward AB

PDB-9ogl:
BG505 MD39.3 SOSIP.664 in complex with 3BC315, BG18 and VRC01 Fabs
Method: single particle / : Ozorowski G, Phulera S, Ward AB

PDB-9ogm:
BG505 MD39.3 Env gp151 MPER nanodisc in complex with 10E8, BG18 and VRC01 Fabs (1x 10E8 Fab)
Method: single particle / : Rantalainen K, Ozorowski G, Gharpure A, Ward AB

EMDB-42524:
Cryo-EM Structure of Full-Length Spike Protein of Omicron XBB.1.5
Method: single particle / : Huynh KW, Chang JS, Fennell KF, Che Y, Wu H

PDB-8usz:
Cryo-EM Structure of Full-Length Spike Protein of Omicron XBB.1.5
Method: single particle / : Huynh KW, Chang JS, Fennell KF, Che Y, Wu H

EMDB-19011:
Human PADI4 in complex with cyclic peptide PADI4_3
Method: single particle / : Benton DJ, Bertran MT, Walport LJ

EMDB-19012:
Human PADI4 in complex with cyclic peptide PADI4_11
Method: single particle / : Benton DJ, Bertran MT, Walport LJ

PDB-8r8u:
Human PADI4 in complex with cyclic peptide PADI4_3
Method: single particle / : Benton DJ, Bertran MT, Walport LJ

PDB-8r8v:
Human PADI4 in complex with cyclic peptide PADI4_11
Method: single particle / : Benton DJ, Bertran MT, Walport LJ

EMDB-27077:
Cryo-EM structure of TTMV-LY1 anellovirus virus-like particle
Method: single particle / : Liou SH, Delagrave S, Swanson K

EMDB-43009:
Cryo-EM structure of TTMV-LY1 anellovirus virus-like particle expressed in HEK293
Method: single particle / : Rajendra B, Swanson K

PDB-8cyg:
Cryo-EM structure of TTMV-LY1 anellovirus virus-like particle
Method: single particle / : Liou SH, Delagrave S, Swanson K

PDB-8v7x:
Cryo-EM structure of TTMV-LY1 anellovirus virus-like particle expressed in HEK293
Method: single particle / : Rajendra B, Swanson K

EMDB-40825:
10E8-GT10.2 immunogen in complex with human Fab 10E8 and mouse Fab W6-10
Method: single particle / : Huang J, Ozorowski G, Ward AB

PDB-8sx3:
10E8-GT10.2 immunogen in complex with human Fab 10E8 and mouse Fab W6-10
Method: single particle / : Huang J, Ozorowski G, Ward AB

EMDB-42478:
Trehalose Synthase (TreS) of Mycobacterium tuberculosis in complex with 6-TreAz compound
Method: single particle / : Pathirage R, Ronning DR

PDB-8uqv:
Trehalose Synthase (TreS) of Mycobacterium tuberculosis in complex with 6-TreAz compound
Method: single particle / : Pathirage R, Ronning DR

EMDB-43658:
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43659:
SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43660:
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vye:
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vyf:
SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vyg:
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-15557:
Bunyamwera Virus Gn/Gc Glycoprotein Tripod
Method: subtomogram averaging / : Hover S, Fontana J

EMDB-15569:
Bunyamwera Virus Gn/Gc Glycoprotein Floor Domain
Method: subtomogram averaging / : Hover S, Fontana J

EMDB-15579:
Bunyamwera Virus Gn/Gc Glycoprotein pH 6.3/K+ Treated
Method: subtomogram averaging / : Hover S, Fontana J

EMDB-26656:
SARS-Cov2 S protein structure in complex with neutralizing monoclonal antibody 034_32
Method: single particle / : Patel A, Ortlund E

PDB-7uow:
SARS-Cov2 S protein structure in complex with neutralizing monoclonal antibody 034_32
Method: single particle / : Patel A, Ortlund E

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more