[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 55 items for (author: sutter & m)

EMDB-41434:
Bottom cylinder of high-resolution phycobilisome quenched by OCP (local refinement)
Method: single particle / : Sauer PV, Sutter M, Cupellini L, Kirst H, Kerfeld CA

EMDB-41435:
Central rod disk in C1 symmetry of high-resolution phycobilisome quenched by OCP (local refinement)
Method: single particle / : Sauer PV, Sutter M, Cupellini L, Kirst H, Kerfeld CA

EMDB-41436:
Central rod disk in D3 symmetry of high-resolution phycobilisome quenched by OCP (local refinement)
Method: single particle / : Sauer PV, Sutter M, Cupellini L, Kirst H, Kerfeld CA

EMDB-41463:
Synechocystis PCC 6803 Phycobilisome quenched by OCP, high resolution
Method: single particle / : Sauer PV, Sutter M, Cupellini L

EMDB-41475:
Top cylinder bound to OCP from high-resolution phycobilisome quenched by OCP (local refinement)
Method: single particle / : Sauer PV, Sutter M, Cupellini L

EMDB-41585:
Rod from high-resolution phycobilisome quenched by OCP (local refinement)
Method: single particle / : Sauer PV, Sutter M, Cupellini L

PDB-8to2:
Bottom cylinder of high-resolution phycobilisome quenched by OCP (local refinement)
Method: single particle / : Sauer PV, Sutter M, Cupellini L

PDB-8to5:
Central rod disk in C1 symmetry of high-resolution phycobilisome quenched by OCP (local refinement)
Method: single particle / : Sauer PV, Sutter M, Cupellini L

PDB-8tpj:
Top cylinder bound to OCP from high-resolution phycobilisome quenched by OCP (local refinement)
Method: single particle / : Sauer PV, Sutter M, Cupellini L

PDB-8tro:
Rod from high-resolution phycobilisome quenched by OCP (local refinement)
Method: single particle / : Sauer PV, Sutter M, Cupellini L

EMDB-16401:
GRM3C BMC shell from R. palustris, T=4
Method: single particle / : Greber BJ, Ferlez BH, Kirst H, Sutter M, Nogales E, Kerfeld CA

EMDB-16402:
GRM3C BMC shell from R. palustris, T=7
Method: single particle / : Greber BJ, Ferlez BH, Kirst H, Sutter M, Nogales E, Kerfeld CA

EMDB-25070:
Synechocystis PCC 6803 Phycobilisome in the down-down conformation
Method: single particle / : Sauer PV, Sutter M, Dominguez-Martin MA, Kirst H, Kerfeld CA

EMDB-25028:
Synechocystis PCC 6803 Phycobilisome core from up-down rod conformation
Method: single particle / : Sauer PV, Sutter M

EMDB-25029:
Synechocystis PCC 6803 Phycobilisome rod from PBS sample
Method: single particle / : Sauer PV, Sutter M, Dominguez-Martin MA, Kirst H, Kerfeld CA

EMDB-25030:
Synechocystis PCC 6803 Phycobilisome core, complex with OCP
Method: single particle / : Sauer PV, Sutter M

EMDB-25031:
Synechocystis PCC 6803 Phycobilisome rod from OCP-PBS complex sample
Method: single particle / : Sauer PV, Sutter M, Dominguez-Martin MA, Kirst H, Kerfeld CA

EMDB-25032:
B-cylinder of Synechocystis PCC 6803 Phycobilisome, complex with OCP - local refinement
Method: single particle / : Sauer PV, Sutter M

EMDB-25033:
T-cylinder of Synechocystis PCC 6803 Phycobilisome, complex with OCP - local refinement
Method: single particle / : Sauer PV, Sutter M

EMDB-25068:
Synechocystis PCC 6803 Phycobilisome in complex with OCP
Method: single particle / : Sauer PV, Sutter M, Dominguez-Martin MA, Kirst H, Kerfeld CA

EMDB-25069:
Synechocystis PCC 6803 Phycobilisome in the up-down rod conformation
Method: single particle / : Sauer PV, Sutter M, Dominguez-Martin MA, Kirst H, Kerfeld CA

EMDB-25071:
Synechocystis PCC 6803 Phycobilisome in the up-up rod conformation
Method: single particle / : Sauer PV, Sutter M, Dominguez-Martin MA, Kirst H, Kerfeld CA

PDB-7sc7:
Synechocystis PCC 6803 Phycobilisome core from up-down rod conformation
Method: single particle / : Sauer PV, Sutter M, Dominguez-Martin MA, Kirst H, Kerfeld CA

PDB-7sc8:
Synechocystis PCC 6803 Phycobilisome rod from PBS sample
Method: single particle / : Sauer PV, Sutter M, Dominguez-Martin MA, Kirst H, Kerfeld CA

PDB-7sc9:
Synechocystis PCC 6803 Phycobilisome core, complex with OCP
Method: single particle / : Sauer PV, Sutter M, Dominguez-Martin MA, Kirst H, Kerfeld CA

PDB-7sca:
Synechocystis PCC 6803 Phycobilisome rod from OCP-PBS complex sample
Method: single particle / : Sauer PV, Sutter M, Dominguez-Martin MA, Kirst H, Kerfeld CA

PDB-7scb:
B-cylinder of Synechocystis PCC 6803 Phycobilisome, complex with OCP - local refinement
Method: single particle / : Sauer PV, Sutter M, Dominguez-Martin MA, Kirst H, Kerfeld CA

PDB-7scc:
T-cylinder of Synechocystis PCC 6803 Phycobilisome, complex with OCP - local refinement
Method: single particle / : Sauer PV, Sutter M, Dominguez-Martin MA, Kirst H, Kerfeld CA

EMDB-20207:
Synthetic beta-carboxysome shell (T=4)
Method: single particle / : Sutter M, Laughlin TG, Sloan NB, Serwas D, Davies KM, Kerfeld CA

EMDB-20208:
Synthetic beta-carboxysome shell (T=3)
Method: single particle / : Sutter M, Laughlin TG, Sloan NB, Serwas D, Davies KM, Kerfeld CA

EMDB-20209:
Synthetic beta-carboxysome shell (prolate full)
Method: single particle / : Sutter M, Laughlin TG, Sloan NB, Serwas D, Davies KM, Kerfeld CA

EMDB-20210:
Synthetic beta-carboxysome shell (T=4)
Method: single particle / : Sutter M, Laughlin TG, Sloan NB, Serwas D, Davies KM, Kerfeld CA

PDB-6owf:
Structure of a synthetic beta-carboxysome shell, T=3
Method: single particle / : Sutter M, Laughlin TG, Davies KM, Kerfeld CA

PDB-6owg:
Structure of a synthetic beta-carboxysome shell, T=4
Method: single particle / : Sutter M, Laughlin TG, Davies KM, Kerfeld CA

EMDB-9296:
Cryo-EM structure of the HO BMC shell: Fully asymmetric reconstruction
Method: single particle / : Greber BJ, Sutter M, Kerfeld CA

EMDB-9307:
Structure of the HO BMC shell: BMC-TD focused structure, closed state
Method: single particle / : Greber BJ, Sutter M, Kerfeld CA

EMDB-9308:
Cryo-EM structure of the HO BMC shell: BMC-TD focused structure, widened inner ring
Method: single particle / : Greber BJ, Sutter M, Kerfeld CA

EMDB-9309:
Cryo-EM structure of the HO BMC shell: Icosahedral reconstruction (main population)
Method: single particle / : Greber BJ, Sutter M

EMDB-9310:
Cryo-EM structure of the HO BMC shell: Icosahedral reconstruction of the compacted subpopulation
Method: single particle / : Greber BJ, Sutter M, Kerfeld CA

EMDB-9311:
Cryo-EM structure of the HO BMC shell: BMC-T1 in the assembled shell
Method: single particle / : Greber BJ, Sutter M

EMDB-9312:
Structure of the HO BMC shell: BMC-TD focused map, open inner pore, compacted shell
Method: single particle / : Greber BJ, Sutter M, Kerfeld CA

EMDB-9313:
Cryo-EM structure of the HO BMC shell: subregion classified for BMC-T: TD-TDTDTD
Method: single particle / : Greber BJ, Sutter M, Kerfeld CA

EMDB-9314:
Cryo-EM structure of the HO BMC shell: subregion classified for BMC-T: TD-TSTSTS
Method: single particle / : Greber BJ, Sutter M, Kerfeld CA

EMDB-9315:
Cryo-EM structure of the HO BMC shell: subregion classified for BMC-T: TS-TDTDTD
Method: single particle / : Greber BJ, Sutter M, Kerfeld CA

PDB-6mzu:
Cryo-EM structure of the HO BMC shell: BMC-TD focused structure, closed state
Method: single particle / : Greber BJ, Sutter M, Kerfeld CA

PDB-6mzv:
Cryo-EM structure of the HO BMC shell: BMC-TD focused structure, widened inner ring
Method: single particle / : Greber BJ, Sutter M, Kerfeld CA

PDB-6mzx:
Cryo-EM structure of the HO BMC shell: Icosahedral reconstruction (main population)
Method: single particle / : Greber BJ, Sutter M, Kerfeld CA

PDB-6mzy:
Cryo-EM structure of the HO BMC shell: Icosahedral reconstruction of the compacted subpopulation
Method: single particle / : Greber BJ, Sutter M, Kerfeld CA

PDB-6n06:
Cryo-EM structure of the HO BMC shell: BMC-T1 in the assembled shell
Method: single particle / : Greber BJ, Sutter M, Kerfeld CA

PDB-6n07:
Structure of the HO BMC shell: BMC-TD focused map, open inner pore, compacted shell
Method: single particle / : Greber BJ, Sutter M, Kerfeld CA

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more