[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,819 items for (author: song & w)

EMDB-66628:
Structure of the HCoV-229E spike glycoprotein determined by subtomogram averaging
Method: subtomogram averaging / : Liang J, Peng C, Li S

EMDB-66645:
Structure of the vesicular stomatitis virus nucleocapsid subbox
Method: subtomogram averaging / : Liu K, Zhang J, Li S

PDB-9x6s:
Structure of Influenza Hemagglutinin (A/Puerto Rico/8/1934)
Method: subtomogram averaging / : Chen Y, Li S

PDB-9x6z:
Structure of the HCoV-229E spike glycoprotein determined by subtomogram averaging
Method: subtomogram averaging / : Liang J, Peng C, Li S

EMDB-66732:
Cryo-EM structure of Ceg14 and AnkJ
Method: single particle / : Li Y, Zheng Q, Li S, Wu Y

EMDB-66735:
Cryo-EM structure of Ceg14-AnkJ-Actin complex
Method: single particle / : Li Y, Li S, Zheng Q, Wu Y

EMDB-66822:
Cryo-EM structure of Ceg14 and Actin complex
Method: single particle / : Li Y, Zheng Q, Li S, Wu Y

PDB-9xch:
Cryo-EM structure of Ceg14 and AnkJ
Method: single particle / : Li Y, Zheng Q, Li S

PDB-9xcm:
Cryo-EM structure of Ceg14-AnkJ-Actin complex
Method: single particle / : Li Y, Li S, Zheng Q

PDB-9xfh:
Cryo-EM structure of Ceg14 and Actin complex
Method: single particle / : Li Y, Zheng Q, Li S

EMDB-66141:
Cryo-EM structure of the insect sex pheromone receptor ApisOR22-Orco heterocomplex
Method: single particle / : Dong Z, Wang YD, Guan ZY, Wang GR, Yin P

EMDB-66142:
Cryo-EM structure of the insect sex pheromone receptor ApisOR22-Orco heterocomplex bound with nepetalactone in the open state
Method: single particle / : Dong Z, Guan ZY, Wang GR, Yin P

PDB-9wpf:
Cryo-EM structure of the insect sex pheromone receptor ApisOR22-Orco heterocomplex
Method: single particle / : Dong Z, Wang YD, Guan ZY, Wang GR, Yin P

PDB-9wpg:
Cryo-EM structure of the insect sex pheromone receptor ApisOR22-Orco heterocomplex bound with nepetalactone in the open state
Method: single particle / : Dong Z, Guan ZY, Wang GR, Yin P

EMDB-76915:
Structure of the HPII Catalase from Escherichia coli
Method: single particle / : Iarocci J, Song M, Guo S

EMDB-66624:
Structure of hemagglutinin from influenza A virions determined by sub-tomogram averaging
Method: subtomogram averaging / : Zhang Z, Chen Y

EMDB-66140:
Cryo-EM structure of the insect sex pheromone receptor ApisOR22-Orco heterocomplex bound with nepetalactone in the closed state.
Method: single particle / : Dong Z, Wang YD, Guan ZY, Wang GR, Yin P

PDB-9wpe:
Cryo-EM structure of the insect sex pheromone receptor ApisOR22-Orco heterocomplex bound with nepetalactone in the closed state.
Method: single particle / : Dong Z, Wang YD, Guan ZY, Wang GR, Yin P

EMDB-75875:
Cryo-EM consensus map of human DNMT3A homo-hexamer
Method: single particle / : Song J, Lu J, Chen J

EMDB-75876:
Cryo-EM structure of human DNMT3A R882H decamer
Method: single particle / : Song J, Lu J, Chen J

EMDB-75877:
Cryo-EM structure of human DNMT3A R882H octadecamer
Method: single particle / : Song J, Lu J, Chen J

EMDB-75885:
Cryo-EM structure of human DNMT3A homo-tetramer
Method: single particle / : Song J, Lu J, Chen J

EMDB-75886:
Cryo-EM structure of human DNMT3A homo-hexamer
Method: single particle / : Song J, Lu J, Chen J

PDB-11nz:
Cryo-EM structure of human DNMT3A R882H decamer
Method: single particle / : Song J, Lu J, Chen J

PDB-11oa:
Cryo-EM structure of human DNMT3A R882H octadecamer
Method: single particle / : Song J, Lu J, Chen J

PDB-11oh:
Cryo-EM structure of human DNMT3A homo-tetramer
Method: single particle / : Song J, Lu J, Chen J

PDB-11oi:
Cryo-EM structure of human DNMT3A homo-hexamer
Method: single particle / : Song J, Lu J, Chen J

EMDB-58252:
Cryo-EM structure of Dopamine 3 receptor:Go complex bound to bitopic AB13-46A
Method: single particle / : Arroyo-Urea S, Garcia-Nafria J

PDB-31bg:
Cryo-EM structure of Dopamine 3 receptor:Go complex bound to bitopic AB13-46A
Method: single particle / : Arroyo-Urea S, Garcia-Nafria J

EMDB-77605:
Cryo-EM structure of BRD4 BD1 with basic patch 1 bound to acetylated nucleosomes
Method: single particle / : Zhu J, Leith EM, O'Donnell EN, Manzano BP, Wu SY, Chiang CM, Armache JP, Tan S

EMDB-77606:
Cryo-EM structure of BRD4 BD1 bound to acetylated nucleosomes
Method: single particle / : Zhu J, Leith EM, O'Donnell EN, Manzano BP, Wu SY, Chiang CM, Armache JP, Tan S

PDB-36iu:
Cryo-EM structure of BRD4 BD1 with basic patch 1 bound to acetylated nucleosomes
Method: single particle / : Zhu J, Leith EM, O'Donnell EN, Manzano BP, Wu SY, Chiang CM, Armache JP, Tan S

PDB-36iv:
Cryo-EM structure of BRD4 BD1 bound to acetylated nucleosomes
Method: single particle / : Zhu J, Leith EM, O'Donnell EN, Manzano BP, Wu SY, Chiang CM, Armache JP, Tan S

EMDB-66890:
SARS-CoV-2 Omicron BA.4/5 spike RBD in complex with C092 Fab and ACE2
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66891:
SARS-CoV-2 Omicron BA.4/5 spike trimer in complex with C092 Fab and ACE2 (2 RBD up)
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66892:
SARS-CoV-2 Omicron BA.4/5 spike trimer in complex with C092 Fab and ACE2 (3 RBD up)
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66893:
SARS-CoV-2 Omicron BA.4/5 spike RBD in complex with C092 Fab and ACE2
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66894:
SARS-CoV-2 Omicron BA.4/5 spike RBD in complex with C807 Fab and ACE2
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66895:
SARS-CoV-2 Omicron BA.4/5 spike trimer in complex with C807 Fab and ACE2 (3 RBD up)
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66896:
SARS-CoV-2 Omicron BA.4/5 spike RBD in complex with BD56-104 Fab and ACE2
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66897:
SARS-CoV-2 Omicron BA.4/5 spike trimer in complex with BD56-104 Fab and ACE2 (3 RBD up)
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66898:
SARS-CoV-2 Omicron BA.4/5 spike RBD in complex with BD56-597 Fab and ACE2
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66899:
SARS-CoV-2 Omicron BA.4/5 spike trimer in complex with BD56-597 Fab and ACE2 (3 RBD up)
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66900:
Sarbecovirus GX2013 Spike S1 in complex with C092 Fab
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66901:
SARS-CoV-2 Omicron LP.8.1 spike trimer (S-6P) in complex with 3 ZL58 Fabs and 3 ZL525 Fabs, focused refinement of RBD and Fab region
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-69516:
In-cell map of mitoribosome from T cells of middle-aged patients after restimulation by subtomogram averaging
Method: subtomogram averaging / : Zhang X, Pan B, Su L, San J

EMDB-69519:
Tomogram of mitochondria in T cell from middle-aged patients after restimulation
Method: electron tomography / : Zhang X, Sang J, Su L, Pan B

EMDB-69521:
Tomogram of mitochondria in T cell from older patients after restimulation
Method: electron tomography / : Zhang X, Sang J, Su L, Pan B

EMDB-69523:
In-cell map of mitoribosome from T cells of older patients after restimulation by subtomogram averaging
Method: subtomogram averaging / : Zhang X, Pan B, Su L, Sang J

EMDB-69526:
In-cell map of electron transport chain supercomplex from T cells of middle-aged patients after restimulation by subtomogram averaging
Method: subtomogram averaging / : Zhang X, Pan B, Su L, Sang J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more