[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 98 items for (author: smit & jm)

EMDB-53487:
human FAM118B trimeric filament
Method: single particle / : Baretic D, Missoury S, Patel K, Coste F, Delarue M, Suskiewicz JM, Ahel I

EMDB-53488:
human FAM118B pentameric filament
Method: single particle / : Baretic D, Missoury S, Patel K, Coste F, Delarue M, Suskiewicz JM, Ahel I

EMDB-47927:
CryoEM Structure Of Respiratory Syncytial Virus Polymerase in complex with Novel Non-Nucleoside Inhibitor Compound 16
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney C

EMDB-47931:
CryoEM map of Respiratory Syncytial Virus Polymerase with Non-Nucleoside Inhibitor compound 21
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney S

PDB-9ecv:
CryoEM Structure Of Respiratory Syncytial Virus Polymerase in complex with Novel Non-Nucleoside Inhibitor Compound 16
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney C

PDB-9ed2:
CryoEM map of Respiratory Syncytial Virus Polymerase with Non-Nucleoside Inhibitor compound 21
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney S

EMDB-48846:
CryoEM structure Of Respiratory Syncytial Virus Polymerase with novel non-nucleoside inhibitor compound 22
Method: single particle / : Yin Y, Yu X, Kalin JH, Tran MT, Sharma S

PDB-9n36:
CryoEM structure Of Respiratory Syncytial Virus Polymerase with novel non-nucleoside inhibitor compound 22
Method: single particle / : Yin Y, Yu X, Kalin JH, Tran MT, Sharma S

EMDB-17980:
Cryo-EM structure of the human BRISC dimer complex bound to compound FX-171-C
Method: single particle / : Chandler F, Zeqiraj E

EMDB-18009:
Cryo-EM structure of the human BRISC dimer complex bound to compound JMS-175-2
Method: single particle / : Chandler F, Zeqiraj E

EMDB-51701:
In situ cryo-electron tomogram of a multi-lamellar vesicle in a NPC2-/- HeLa cell. #1
Method: electron tomography / : Kraus F, He Y, Swarup S, Overmyer KA, Jiang Y, Brenner J, Capitanio C, Bieber A, Jen A, Nightingale NM, Anderson BJ, Lee C, Paulo JA, Smith IR, Plitzko JM, Gygi SP, Schulman BA, Wilfling F, Coon JJ, Harper JW

EMDB-51702:
In situ cryo-electron tomogram of a multi-lamellar vesicle in a NPC2-/- HeLa cell. #2
Method: electron tomography / : Kraus F, He Y, Swarup S, Overmyer KA, Jiang Y, Brenner J, Capitanio C, Bieber A, Jen A, Nightingale NM, Anderson BJ, Lee C, Paulo JA, Smith IR, Plitzko JM, Gygi SP, Schulman BA, Wilfling F, Coon JJ, Harper JW

EMDB-45728:
Structure of ecarin from the venom of Kenyan saw-scaled viper in complex with the Fab of neutralizing antibody H11
Method: single particle / : Mindrebo JT, Lander GC

EMDB-41024:
MD65 N332-GT5 SOSIP in complex with RM_N332_03 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-41025:
MD65 N332-GT5 SOSIP in complex with RM_N332_36 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-41026:
MD65 N332-GT5 SOSIP in complex with RM_N332_32 Fab and RM20A3
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-41027:
MD65 N332-GT5 SOSIP in complex with RM_N332_08 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-41034:
MD64 N332-GT5 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-41035:
MD65 N332-GT5 SOSIP in complex with RM_N332_07 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-27692:
LM18/Nb136 bispecific tetra-nanobody immunoglobulin in complex with SARS-CoV-2-6P-Mut7 S protein (focused refinement)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

EMDB-27693:
LM18/Nb136 bispecific tetra-nanobody immunoglobulin in complex with SARS-CoV-2-6P-Mut7 S protein (global refinement)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

EMDB-29044:
Structure of Zanidatamab bound to HER2
Method: single particle / : Worrall LJ, Atkinson CE, Sanches M, Dixit S, Strynadka NCJ

EMDB-15636:
Human 80S ribosome structure from pFIB-lamellae
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16185:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: 15 to 30 nm
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16186:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: above 30 nm matched control (for 15 to 30 nm)
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16192:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer:30 to 45 nm
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16193:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: above 45 nm matched control (for 30 to 45 nm)
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16194:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer:45 to 60 nm
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16195:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: above 60 nm matched control (for 45 to 60 nm)
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16196:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: 0 to 15 nm
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16199:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: above 15 nm matched control (for 0 to 15 nm)
Method: subtomogram averaging / : Berger C, Grange M

EMDB-26360:
Structure of E. coli dGTPase bound to T7 bacteriophage protein Gp1.2
Method: single particle / : Klemm BP, Hsu AL, Borgnia MJ, Schaaper RM

EMDB-26361:
Structure of E. coli dGTPase bound to T7 bacteriophage protein Gp1.2 and dGTP
Method: single particle / : Klemm BP, Dillard LB, Borgnia MJ, Schaaper RM

EMDB-26362:
Structure of E. coli dGTPase bound to T7 bacteriophage protein Gp1.2 and GTP
Method: single particle / : Klemm BP, Hsu AL, Borgnia MJ, Schaaper RM

EMDB-27248:
Sub-tomogram averaged map of full-length post-fusion CHIKV E1 glycoprotein trimer
Method: subtomogram averaging / : Mangala Prasad V, Lee KK

EMDB-27559:
Cryo-EM map of Chikungunya virus strain s27
Method: single particle / : Mangala Prasad V, Lee KK

EMDB-27203:
IMM20190 Fab complex with SARS-CoV-2 Spike Trimer
Method: single particle / : Nikitin PA, DiMuzio JD, Dowling JP, Patel NB, Bingaman-Steele JL, Heimbach BC, Henriquez N, Nicolescu C, Polley A, Sikorski EL, Howanski RJ, Nath M, Shukla H, Scheaffer SM, Finn JP, Liang LF, Smith T, Storm N, McKay LGA, Johnson RI, Malsick LE, Honko AN, Griffiths A, Diamond MS, Sarma P, Geising DH, Morin MJ, Robinson MK

EMDB-27192:
IMM20253 Fab complex with Trimer Spike protein of SARS-CoV-2 virus
Method: single particle / : Nikitin PA, DiMuzio JD, Dowling JP, Patel NB, Bingaman-Steele JL, Heimbach BC, Henriquez N, Nicolescu C, Polley A, Sikorski EL, Howanski RJ, Nath M, Shukla H, Scheaffer SM, Finn JP, Liang LF, Smith T, Storm N, McKay LGA, Johnson RI, Malsick LE, Honko AN, Griffiths A, Diamond MS, Sarma P, Geising DH, Morin MJ, Robinson MK

EMDB-27193:
IMM20253 Fab complex with Spike monomer
Method: single particle / : Nikitin PA, DiMuzio JD, Dowling JP, Patel NB, Bingaman-Steele JL, Heimbach BC, Henriquez N, Nicolescu C, Polley A, Sikorski EL, Howanski RJ, Nath M, Shukla H, Scheaffer SM, Finn JP, Liang LF, Smith T, Storm N, McKay LGA, Johnson RI, Malsick LE, Honko AN, Griffiths A, Diamond MS, Sarma P, Geising DH, Morin MJ, Robinson MK

EMDB-27204:
IMM20184 Fab complex with SARS-CoV-2 Spike Trimer
Method: single particle / : Nikitin PA, DiMuzio JD, Dowling JP, Patel NB, Bingaman-Steele JL, Heimbach BC, Henriquez N, Nicolescu C, Polley A, Sikorski EL, Howanski RJ, Nath M, Shukla H, Scheaffer SM, Finn JP, Liang LF, Smith T, Storm N, McKay LGA, Johnson RI, Malsick LE, Honko AN, Griffiths A, Diamond MS, Sarma P, Geising DH, Morin MJ, Robinson MK

EMDB-26522:
SARS-CoV-2 6P Mut7 in complex with K398.25 Fab
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26523:
SARS-CoV-1 in complex with K398.25 Fab
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26524:
SARS-CoV-2 6P Mut7 in complex with K398.16 Fab
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26525:
SARS-CoV-2 6P Mut7 in complex with K398.16 Fab (3 bound)
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26526:
SARS-CoV-1 in complex with K398.16 Fab
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26527:
SARS-CoV-2 6P Mut7 in complex with K288.2 Fab
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26528:
SARS-CoV-2 6P Mut7 in complex with K398.8 Fab
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26529:
SARS-CoV-2 6P Mut7 in complex with K398.8 Fab (2 bound)
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26530:
SARS-CoV-2 6P Mut7 in complex with K398.18 Fab
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26531:
SARS-CoV-2 6P Mut7 in complex with K398.18 Fabs (2 bound)
Method: single particle / : Lee WH, Torres JL, Ward AB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more