[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 212 items for (author: singh & sk)

EMDB-43255:
Protective effect of human non-neutralizing cross-reactive spike antibodies elicited by SARS-CoV-2 mRNA vaccination
Method: single particle / : Bajic G

PDB-8via:
Protective effect of human non-neutralizing cross-reactive spike antibodies elicited by SARS-CoV-2 mRNA vaccination
Method: single particle / : Bajic G

EMDB-18318:
Cryo-EM structure of Vipp1 helical filament with lattice 1 (Vipp1_L1)
Method: helical / : Naskar S, Low HH

EMDB-18321:
Cryo-EM structure of Vipp1-deltaH6_aa1-219 helical filament with lattice 2 (Vipp1-deltaH6_L2)
Method: helical / : Naskar S, Low HH

EMDB-18319:
Cryo-EM structure of Vipp1-F197K/L200K helical filament with lattice 1 (Vipp1-F197K/L200K_L1)
Method: helical / : Naskar S, Low HH

EMDB-18322:
Cryo-EM structure of Vipp1-deltaH6_aa1-219 helical filament with lattice 3 (Vipp1-deltaH6_L3)
Method: helical / : Naskar S, Low HH

EMDB-44482:
Cryo-EM structure of the HIV-1 JR-FL IDL Env trimer in complex with PGT122 Fab
Method: single particle / : Gorman J, Kwong PD

EMDB-44484:
Cryo-EM structure of the HIV-1 BG505 IDL Env trimer in complex with 3BNC117 and 10-1074 Fabs
Method: single particle / : Gorman J, Kwong PD

EMDB-44491:
Cryo-EM structure of the HIV-1 WITO IDL Env trimer in complex with PGT122 Fab
Method: single particle / : Gorman J, Kwong PD

PDB-9ber:
Cryo-EM structure of the HIV-1 JR-FL IDL Env trimer in complex with PGT122 Fab
Method: single particle / : Gorman J, Kwong PD

PDB-9bew:
Cryo-EM structure of the HIV-1 BG505 IDL Env trimer in complex with 3BNC117 and 10-1074 Fabs
Method: single particle / : Gorman J, Kwong PD

PDB-9bf6:
Cryo-EM structure of the HIV-1 WITO IDL Env trimer in complex with PGT122 Fab
Method: single particle / : Gorman J, Kwong PD

EMDB-29920:
Cardiac amyloid fibrils extracted from a wild-type ATTR amyloidosis patient
Method: helical / : Nguyen BA, Saelices L

PDB-8gbr:
Cardiac amyloid fibrils extracted from a wild-type ATTR amyloidosis patient
Method: helical / : Nguyen BA, Saelices L

EMDB-29874:
Cardiac amyloid fibrils extracted from a wild-type ATTR amyloidosis patient
Method: helical / : Nguyen BA, Saelices L

PDB-8g9r:
Cardiac amyloid fibrils extracted from a wild-type ATTR amyloidosis patient
Method: helical / : Nguyen BA, Saelices L

EMDB-29395:
Subtomogram average of HuCoV-NL63 spike protein from purified intact virions
Method: subtomogram averaging / : Chen M, Chmielewski D, Schmid M, Jin J, Chiu W

EMDB-34174:
Structure of beta-arrestin2 in complex with a phosphopeptide corresponding to the human Atypical chemokine receptor 2, ACKR2 (D6R)
Method: single particle / : Maharana J, Sarma P, Yadav MK, Banerjee R, Shukla AK

EMDB-36078:
Structure of beta-arrestin2 in complex with M2Rpp
Method: single particle / : Maharana J, Sano FK, Shihoya W, Banerjee R, Nureki O, Shukla AK

EMDB-36081:
Structure of beta-arrestin2 in complex with D6Rpp (Local Refine)
Method: single particle / : Maharana J, Sarma P, Yadav MK, Chami M, Banerjee R, Shukla AK

EMDB-36082:
Structure of beta-arrestin1 in complex with D6Rpp
Method: single particle / : Maharana J, Sarma P, Yadav MK, Chami M, Banerjee R, Shukla AK

EMDB-36090:
Structure of Muscarinic receptor (M2R) in complex with beta-arrestin1 (Local refine, cross-linked)
Method: single particle / : Maharana J, Sano FK, Shihoya W, Banerjee R, Nureki O, Shukla AK

EMDB-36091:
Muscarinic receptor (M2R) in complex with beta-arrestin1 (Low resolution full map, Cross-linked)
Method: single particle / : Maharana J, Sano FK, Shihoya W, Banerjee R, Nureki O, Shukla AK

EMDB-36093:
Muscarinic receptor (M2R) in complex with beta-arrestin1 (Low resolution full map, non-crosslinked)
Method: single particle / : Maharana J, Sano FK, Shihoya W, Banerjee R, Nureki O, Shukla AK

EMDB-36110:
Structure of basal beta-arrestin2
Method: single particle / : Maharana J, Sarma P, Yadav MK, Chami M, Banerjee R, Shukla AK

EMDB-36124:
Structure of beta-arrestin1 in complex with C3aRpp
Method: single particle / : Maharana J, Sarma P, Yadav MK, Chami M, Banerjee R, Shukla AK

EMDB-36126:
Structure of Muscarinic receptor (M2R) in complex with beta-arrestin1 (Local Refine, non-cross linked)
Method: single particle / : Maharana J, Sano FK, Shihoya W, Banerjee R, Nureki O, Shukla AK

PDB-8go9:
Structure of beta-arrestin2 in complex with a phosphopeptide corresponding to the human Atypical chemokine receptor 2, ACKR2 (D6R)
Method: single particle / : Maharana J, Sarma P, Yadav MK, Banerjee R, Shukla AK

PDB-8j8r:
Structure of beta-arrestin2 in complex with M2Rpp
Method: single particle / : Maharana J, Sano FK, Shihoya W, Banerjee R, Nureki O, Shukla AK

PDB-8j8v:
Structure of beta-arrestin2 in complex with D6Rpp (Local Refine)
Method: single particle / : Maharana J, Sarma P, Yadav MK, Chami M, Banerjee R, Shukla AK

PDB-8j8z:
Structure of beta-arrestin1 in complex with D6Rpp
Method: single particle / : Maharana J, Sarma P, Yadav MK, Chami M, Banerjee R, Shukla AK

PDB-8j97:
Structure of Muscarinic receptor (M2R) in complex with beta-arrestin1 (Local refine, cross-linked)
Method: single particle / : Maharana J, Sano FK, Shihoya W, Banerjee R, Nureki O, Shukla AK

PDB-8j9k:
Structure of basal beta-arrestin2
Method: single particle / : Maharana J, Sarma P, Yadav MK, Chami M, Banerjee R, Shukla AK

PDB-8ja3:
Structure of beta-arrestin1 in complex with C3aRpp
Method: single particle / : Maharana J, Sarma P, Yadav MK, Chami M, Banerjee R, Shukla AK

PDB-8jaf:
Structure of Muscarinic receptor (M2R) in complex with beta-arrestin1 (Local Refine, non-cross linked)
Method: single particle / : Maharana J, Sano FK, Shihoya W, Banerjee R, Nureki O, Shukla AK

EMDB-41171:
Cryo-EM structure of cardiac amyloid fibril from a variant ATTR I84S amyloidosis patient-3, wild-type morphology
Method: helical / : Nguyen BA, Singh V, Saelices L

EMDB-41172:
Cryo-EM structure of cardiac amyloid fibril from a variant ATTR I84S amyloidosis patient-3, variant-type morphology
Method: helical / : Nguyen BA, Singh V, Saelices L

PDB-8tdn:
Cryo-EM structure of cardiac amyloid fibril from a variant ATTR I84S amyloidosis patient-3, wild-type morphology
Method: helical / : Nguyen BA, Singh V, Saelices L

PDB-8tdo:
Cryo-EM structure of cardiac amyloid fibril from a variant ATTR I84S amyloidosis patient-3, variant-type morphology
Method: helical / : Nguyen BA, Singh V, Saelices L

PDB-8fr7:
A hinge glycan regulates spike bending and impacts coronavirus infectivity
Method: single particle / : Pintilie G, Wilson E, Chmielewski D, Schmid MF, Jin J, Chen M, Singharoy A, Chiu W

PDB-8e7e:
Cryo-EM structure of cardiac amyloid fibril from a variant ATTR I84S amyloidosis patient
Method: helical / : Nguyen BA, Singh V, Afrin S, Saelices L

PDB-8e7j:
Cryo-EM structure of cardiac amyloid fibril from a variant ATTR I84S amyloidosis patient
Method: helical / : Nguyen BA, Saelices L

EMDB-27323:
Cardiac amyloid fibrils extracted from a variant ATTR I84S amyloidosis patient (2).
Method: helical / : Nguyen BA, Saelices L

EMDB-26685:
Cardiac amyloid fibrils extracted from a variant ATTR I84S amyloidosis patient
Method: helical / : Nguyen BA, Saelices L

EMDB-26691:
Cardiac amyloid fibrils extracted from a wild-type ATTR amyloidosis patient
Method: helical / : Nguyen BA, Saelices L

EMDB-26587:
Cardiac amyloid fibrils extracted from a wild-type ATTR amyloidosis patient
Method: helical / : Nguyen BA, Saelices L

EMDB-27112:
S728-1157 IgG in complex with SARS-CoV-2-6P-Mut7 Spike protein (global refinement)
Method: single particle / : Ozorowski G, Torres JL, Turner HL, Ward AB

EMDB-27113:
S728-1157 IgG in complex with SARS-CoV-2-6P-Mut7 Spike protein (focused refinement)
Method: single particle / : Ozorowski G, Torres JL, Turner HL, Ward AB

PDB-8d0z:
S728-1157 IgG in complex with SARS-CoV-2-6P-Mut7 Spike protein (focused refinement)
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-28092:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-093
Method: single particle / : Callaway H, Li H, Yu X, Shek J, Saphire EO

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more