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Showing 1 - 50 of 484 items for (author: shima & s)
![](data/emdb/media/38466/mapi/surf_x.jpg)
EMDB-38466:
Cryo-EM structure of the RhoG/DOCK5/ELMO1/Rac1 complex: RhoG/DOCK5/ELMO1 focused map
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
![](data/emdb/media/60136/mapi/surf_z.jpg)
EMDB-60136:
Cryo-EM structure of the RhoG/DOCK5/ELMO1/Rac1 complex
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
![](data/emdb/media/60146/mapi/surf_z.jpg)
EMDB-60146:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 1)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
![](data/emdb/media/60147/mapi/surf_z.jpg)
EMDB-60147:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 2)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
![](data/emdb/media/60148/mapi/surf_z.jpg)
EMDB-60148:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 3)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
![](data/emdb/media/60149/mapi/surf_z.jpg)
EMDB-60149:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 4)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
![](data/emdb/media/60150/mapi/surf_z.jpg)
EMDB-60150:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 5)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
![](data/pdb/img/8xm7.jpg)
PDB-8xm7:
Cryo-EM structure of the RhoG/DOCK5/ELMO1/Rac1 complex: RhoG/DOCK5/ELMO1 focused map
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
![](data/pdb/img/8zj2.jpg)
PDB-8zj2:
Cryo-EM structure of the RhoG/DOCK5/ELMO1/Rac1 complex
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
![](data/pdb/img/8zji.jpg)
PDB-8zji:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 1)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
![](data/pdb/img/8zjj.jpg)
PDB-8zjj:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 2)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
![](data/pdb/img/8zjk.jpg)
PDB-8zjk:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 3)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
![](data/pdb/img/8zjl.jpg)
PDB-8zjl:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 4)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
![](data/pdb/img/8zjm.jpg)
PDB-8zjm:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 5)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
![](data/emdb/media/40046/mapi/surf_x.jpg)
EMDB-40046:
CryoEM structure of Influenza A virus A/Melbourner/1/1946 (H1N1) hemagglutinin bound to GS10-X6-BE4 Fab
Method: single particle / : Seattle Structural Genomics Center for Infectious Disease (SSGCID)
![](data/pdb/img/8ghk.jpg)
PDB-8ghk:
CryoEM structure of Influenza A virus A/Melbourner/1/1946 (H1N1) hemagglutinin bound to GS10-X6-BE4 Fab
Method: single particle / : Seattle Structural Genomics Center for Infectious Disease (SSGCID)
![](data/pdb/img/8wt9.jpg)
PDB-8wt9:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the post-strand exchange state (Holliday junction resolution)
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H
![](data/pdb/img/8wt8.jpg)
PDB-8wt8:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the post-strand exchange state (Holliday junction intermediate)
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H
![](data/pdb/img/8wt7.jpg)
PDB-8wt7:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the pre-strand exchange locked state
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H
![](data/pdb/img/8wt6.jpg)
PDB-8wt6:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the pre-strand exchange state
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H
![](data/emdb/media/37830/mapi/surf_x.jpg)
EMDB-37830:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the post-strand exchange state (Holliday junction resolution)
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H
![](data/emdb/media/37829/mapi/surf_y.jpg)
EMDB-37829:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the post-strand exchange state (Holliday junction intermediate)
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H
![](data/emdb/media/37828/mapi/surf_y.jpg)
EMDB-37828:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the pre-strand exchange locked state
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H
![](data/emdb/media/37827/mapi/surf_y.jpg)
EMDB-37827:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the pre-strand exchange state
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H
![](data/emdb/media/36271/emdbimg.jpg)
EMDB-36271:
Cryo-EM structure of the DOCK5/ELMO1 complex, focused on one protomer
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
![](data/pdb/img/8jhk.jpg)
PDB-8jhk:
Cryo-EM structure of the DOCK5/ELMO1 complex, focused on one protomer
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
![](data/emdb/media/36989/emdbimg.jpg)
EMDB-36989:
Full agonist-bound mu-type opioid receptor-G protein complex
Method: single particle / : Uchikubo-Kamo T, Shirouzu M, Hisano T, Imai S, Kaneko S, Shimada I
![](data/emdb/media/36990/emdbimg.jpg)
EMDB-36990:
Full agonist- and positive allosteric modulator-bound mu-type opioid receptor-G protein complex
Method: single particle / : Uchikubo-Kamo T, Shirouzu M, Hisano T, Imai S, Kaneko S, Shimada I
![](data/pdb/img/8k9k.jpg)
PDB-8k9k:
Full agonist-bound mu-type opioid receptor-G protein complex
Method: single particle / : Hisano T, Uchikubo-Kamo T, Shirouzu M, Imai S, Kaneko S, Shimada I
![](data/pdb/img/8k9l.jpg)
PDB-8k9l:
Full agonist- and positive allosteric modulator-bound mu-type opioid receptor-G protein complex
Method: single particle / : Hisano T, Uchikubo-Kamo T, Shirouzu M, Imai S, Kaneko S, Shimada I
![](data/emdb/media/38372/emdbimg.jpg)
EMDB-38372:
SARS-CoV-2 Omicron BQ.1.1 Variant Spike Protein Complexed with MO11 Fab
Method: single particle / : Ishimaru H, Nishimura M, Shigematsu H, Marini MI, Hasegawa N, Takamiya R, Iwata S, Mori Y
![](data/pdb/img/8xi6.jpg)
PDB-8xi6:
SARS-CoV-2 Omicron BQ.1.1 Variant Spike Protein Complexed with MO11 Fab
Method: single particle / : Ishimaru H, Nishimura M, Shigematsu H, Marini MI, Hasegawa N, Takamiya R, Iwata S, Mori Y
![](data/emdb/media/43008/mapi/surf_x.jpg)
EMDB-43008:
Fab fragment of human mAb #58 in complex with computationally optimized broadly reactive H1 influenza hemagglutinin X6
Method: single particle / : Nagashima KA, Mousa JJ
![](data/pdb/img/8v7o.jpg)
PDB-8v7o:
Fab fragment of human mAb #58 in complex with computationally optimized broadly reactive H1 influenza hemagglutinin X6
Method: single particle / : Nagashima KA, Mousa JJ
![](data/emdb/media/38330/emdbimg.jpg)
EMDB-38330:
ETB-eGt complex bound to endothelin-1
Method: single particle / : Oshima HS, Sano FK, Akasaka H, Iwama A, Shihoya W, Nureki O
![](data/pdb/img/8xgr.jpg)
PDB-8xgr:
ETB-eGt complex bound to endothelin-1
Method: single particle / : Oshima HS, Sano FK, Akasaka H, Iwama A, Shihoya W, Nureki O
![](data/emdb/media/36442/emdbimg.jpg)
EMDB-36442:
The cryo-EM structure of the nonameric RAD51 ring bound to the nucleosome with the linker DNA binding
Method: single particle / : Shioi T, Hatazawa S, Ogasawara M, Takizawa Y, Kurumizaka H
![](data/emdb/media/36443/emdbimg.jpg)
EMDB-36443:
The cryo-EM structure of the decameric RAD51 ring bound to the nucleosome without the linker DNA binding
Method: single particle / : Shioi T, Hatazawa S, Ogasawara M, Takizawa Y, Kurumizaka H
![](data/emdb/media/36444/emdbimg.jpg)
EMDB-36444:
The cryo-EM structure of the RAD51 filament bound to the nucleosome
Method: single particle / : Shioi T, Hatazawa S, Ogasawara M, Takizawa Y, Kurumizaka H
![](data/emdb/media/38228/emdbimg.jpg)
EMDB-38228:
The cryo-EM structure of the octameric RAD51 ring bound to the nucleosome with the linker DNA binding
Method: single particle / : Shioi T, Hatazawa S, Ogasawara M, Takizawa Y, Kurumizaka H
![](data/emdb/media/38229/emdbimg.jpg)
EMDB-38229:
The cryo-EM structure of the decameric RAD51 ring bound to the nucleosome with the linker DNA binding
Method: single particle / : Shioi T, Hatazawa S, Ogasawara M, Takizawa Y, Kurumizaka H
![](data/emdb/media/38230/emdbimg.jpg)
EMDB-38230:
The cryo-EM structure of the RAD51 L1 and L2 loops bound to the linker DNA with the sticky end of the nucleosome
Method: single particle / : Shioi T, Hatazawa S, Ogasawara M, Takizawa Y, Kurumizaka H
![](data/emdb/media/38231/emdbimg.jpg)
EMDB-38231:
The cryo-EM structure of the RAD51 N-terminal lobe domain bound to the histone H4 tail of the nucleosome
Method: single particle / : Shioi T, Hatazawa S, Ogasawara M, Takizawa Y, Kurumizaka H
![](data/emdb/media/38232/emdbimg.jpg)
EMDB-38232:
The cryo-EM structure of the RAD51 L2 loop bound to the linker DNA with the blunt end of the nucleosome
Method: single particle / : Shioi T, Hatazawa S, Ogasawara M, Takizawa Y, Kurumizaka H
![](data/emdb/media/38233/emdbimg.jpg)
EMDB-38233:
The cryo-EM structure of the RAD51 L1 and L2 loops bound to the linker DNA with the blunt end of the nucleosome
Method: single particle / : Shioi T, Hatazawa S, Ogasawara M, Takizawa Y, Kurumizaka H
![](data/pdb/img/8jnd.jpg)
PDB-8jnd:
The cryo-EM structure of the nonameric RAD51 ring bound to the nucleosome with the linker DNA binding
Method: single particle / : Shioi T, Hatazawa S, Ogasawara M, Takizawa Y, Kurumizaka H
![](data/pdb/img/8jne.jpg)
PDB-8jne:
The cryo-EM structure of the decameric RAD51 ring bound to the nucleosome without the linker DNA binding
Method: single particle / : Shioi T, Hatazawa S, Ogasawara M, Takizawa Y, Kurumizaka H
![](data/pdb/img/8jnf.jpg)
PDB-8jnf:
The cryo-EM structure of the RAD51 filament bound to the nucleosome
Method: single particle / : Shioi T, Hatazawa S, Ogasawara M, Takizawa Y, Kurumizaka H
![](data/pdb/img/8xbt.jpg)
PDB-8xbt:
The cryo-EM structure of the octameric RAD51 ring bound to the nucleosome with the linker DNA binding
Method: single particle / : Shioi T, Hatazawa S, Ogasawara M, Takizawa Y, Kurumizaka H
![](data/pdb/img/8xbu.jpg)
PDB-8xbu:
The cryo-EM structure of the decameric RAD51 ring bound to the nucleosome with the linker DNA binding
Method: single particle / : Shioi T, Hatazawa S, Ogasawara M, Takizawa Y, Kurumizaka H
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