[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 76 items for (author: shannon & a)

EMDB-17383:
Tau filaments extracted from human brain with the DeltaK281 mutation in MAPT
Method: helical / : Schweighauser M, Garringer HJ, Klingstedt T, Masuda-Suzukake M, Murrell JR, Vidal R, Scheres SHW, Goedert M, Ghetti B, Newell KL

PDB-8p34:
Tau filaments extracted from human brain with the DeltaK281 mutation in MAPT
Method: helical / : Schweighauser M, Garringer HJ, Klingstedt T, Masuda-Suzukake M, Murrell JR, Vidal R, Scheres SHW, Goedert M, Ghetti B, Newell KL

EMDB-34202:
AK-42 inhibitor binding human ClC-2 TMD
Method: single particle / : Wang L

PDB-8gqu:
AK-42 inhibitor binding human ClC-2 TMD
Method: single particle / : Wang L

EMDB-16540:
Neurofascin isoform NF155 extracellular domain
Method: single particle / : McKie SJ, Deane JE, Butt BG

EMDB-26105:
BamABCDE bound to substrate EspP class 1
Method: single particle / : Doyle MT, Jimah JR, Dowdy T, Ohlemacher SI, Larion M, Hinshaw JE, Bernstein HD

EMDB-26106:
BamABCDE bound to substrate EspP class 2
Method: single particle / : Doyle MT, Jimah JR, Dowdy T, Ohlemacher SI, Larion M, Hinshaw JE, Bernstein HD

EMDB-26107:
BamABCDE bound to substrate EspP class 4
Method: single particle / : Doyle MT, Jimah JR, Dowdy T, Ohlemacher SI, Larion M, Hinshaw JE, Bernstein HD

EMDB-26108:
BamABCDE bound to substrate EspP class 3
Method: single particle / : Doyle MT, Jimah JR, Dowdy T, Ohlemacher SI, Larion M, Hinshaw JE, Bernstein HD

EMDB-26109:
BamABCDE bound to substrate EspP class 5
Method: single particle / : Doyle MT, Jimah JR, Dowdy T, Ohlemacher SI, Larion M, Hinshaw JE, Bernstein HD

EMDB-26110:
BamABCDE bound to substrate EspP class 6
Method: single particle / : Doyle MT, Jimah JR, Dowdy T, Ohlemacher SI, Larion M, Hinshaw JE, Bernstein HD

EMDB-26111:
BamABCDE bound to substrate EspP in the open-sheet EspP state
Method: single particle / : Doyle MT, Jimah JR, Dowdy T, Ohlemacher SI, Larion M, Hinshaw JE, Bernstein HD

EMDB-26112:
BamABCDE bound to substrate EspP in the intermediate-open EspP state
Method: single particle / : Doyle MT, Jimah JR, Dowdy T, Ohlemacher SI, Larion M, Hinshaw JE, Bernstein HD

EMDB-26113:
BamABCDE bound to substrate EspP in the barrelized EspP/continuous open BamA state
Method: single particle / : Doyle MT, Jimah JR, Dowdy T, Ohlemacher SI, Larion M, Hinshaw JE, Bernstein HD

EMDB-26114:
BamABCDE bound to substrate EspP
Method: single particle / : Doyle MT, Jimah JR, Dowdy T, Ohlemacher SI, Larion M, Hinshaw JE, Bernstein HD

PDB-7tsz:
BamABCDE bound to substrate EspP class 1
Method: single particle / : Doyle MT, Jimah JR, Dowdy T, Ohlemacher SI, Larion M, Hinshaw JE, Bernstein HD

PDB-7tt0:
BamABCDE bound to substrate EspP class 2
Method: single particle / : Doyle MT, Jimah JR, Dowdy T, Ohlemacher SI, Larion M, Hinshaw JE, Bernstein HD

PDB-7tt1:
BamABCDE bound to substrate EspP class 4
Method: single particle / : Doyle MT, Jimah JR, Dowdy T, Ohlemacher SI, Larion M, Hinshaw JE, Bernstein HD

PDB-7tt2:
BamABCDE bound to substrate EspP class 3
Method: single particle / : Doyle MT, Jimah JR, Dowdy T, Ohlemacher SI, Larion M, Hinshaw JE, Bernstein HD

PDB-7tt3:
BamABCDE bound to substrate EspP class 5
Method: single particle / : Doyle MT, Jimah JR, Dowdy T, Ohlemacher SI, Larion M, Hinshaw JE, Bernstein HD

PDB-7tt4:
BamABCDE bound to substrate EspP class 6
Method: single particle / : Doyle MT, Jimah JR, Dowdy T, Ohlemacher SI, Larion M, Hinshaw JE, Bernstein HD

PDB-7tt5:
BamABCDE bound to substrate EspP in the open-sheet EspP state
Method: single particle / : Doyle MT, Jimah JR, Dowdy T, Ohlemacher SI, Larion M, Hinshaw JE, Bernstein HD

PDB-7tt6:
BamABCDE bound to substrate EspP in the intermediate-open EspP state
Method: single particle / : Doyle MT, Jimah JR, Dowdy T, Ohlemacher SI, Larion M, Hinshaw JE, Bernstein HD

PDB-7tt7:
BamABCDE bound to substrate EspP in the barrelized EspP/continuous open BamA state
Method: single particle / : Doyle MT, Jimah JR, Dowdy T, Ohlemacher SI, Larion M, Hinshaw JE, Bernstein HD

PDB-7ttc:
BamABCDE bound to substrate EspP
Method: single particle / : Doyle MT, Jimah JR, Dowdy T, Ohlemacher SI, Larion M, Hinshaw JE, Bernstein HD

EMDB-32908:
Flagellar motor from wild type H. pylori
Method: subtomogram averaging / : Lu P, Zhang HW, Gao YZ, Jia XD, Liu Z, Wang DP, Au SWA, Zhang QF

EMDB-32909:
Flagellar motor of H.pylori delta-FliY mutant
Method: subtomogram averaging / : Lu P, Zhang HW, Gao YZ, Jia XD, Liu Z, Wang DP, Au SWA, Zhang QF

EMDB-32910:
Flagellar motor of H.pylori FliYc mutant
Method: subtomogram averaging / : Lu P, Zhang HW, Gao YZ, Jia XD, Liu Z, Wang DP, Au SWA, Zhang QF

EMDB-31061:
A dual mechanism of action of AT-527 against SARS-CoV-2 polymerase
Method: single particle / : Shannon A, Fattorini V

PDB-7ed5:
A dual mechanism of action of AT-527 against SARS-CoV-2 polymerase
Method: single particle / : Shannon A, Fattorini V, Sama B, Selisko B, Feracci M, Falcou C, Gauffre P, El Kazzi P, Delpal A, Decroly E, Alvarez K, Eydoux C, Guillemot JC, Moussa A, Good S, Colla P, Lin K, Sommadossi JP, Zhu YX, Yan XD, Shi H, Ferron F, Canard B

EMDB-22490:
Structure of human TRPA1 in complex with antagonist compound 21
Method: single particle / : Rohou A, Rouge L, Chen H

PDB-7jup:
Structure of human TRPA1 in complex with antagonist compound 21
Method: single particle / : Rohou A, Rouge L

EMDB-21688:
Structure of human TRPA1 in complex with inhibitor GDC-0334
Method: single particle / : Rohou A, Rouge L, Arthur CP

PDB-6wj5:
Structure of human TRPA1 in complex with inhibitor GDC-0334
Method: single particle / : Rohou A, Rouge L, Arthur CP, Volgraf M, Chen H

EMDB-22009:
Structure of human TRPA1 in complex with agonist GNE551
Method: single particle / : Rohou A, Rouge L, Chen H

PDB-6x2j:
Structure of human TRPA1 in complex with agonist GNE551
Method: single particle / : Rohou A, Rouge L, Chen H

EMDB-22729:
Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C002 (state 1)
Method: single particle / : Barnes CO, Malyutin AG, Bjorkman PJ

EMDB-22730:
Structure of the SARS-CoV-2 S 6P trimer in complex with the human neutralizing antibody Fab fragment, C002 (State 2)
Method: single particle / : Malyutin AG, Barnes CO, Bjorkman PJ

EMDB-22731:
Structure of the SARS-CoV-2 S 6P trimer in complex with the human neutralizing antibody Fab fragment, C104
Method: single particle / : Barnes CO, Malyutin AG, Bjorkman PJ

EMDB-22732:
Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C110
Method: single particle / : Dam KA, Barnes CO, Bjorkman PJ

EMDB-22733:
Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C119
Method: single particle / : Sharaf NG, Barnes CO, Bjorkman PJ

EMDB-22734:
Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C121 (State 1)
Method: single particle / : Abernathy ME, Barnes CO, Bjorkman PJ

EMDB-22735:
Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C121 (State 2)
Method: single particle / : Abernathy ME, Barnes CO, Bjorkman PJ

EMDB-22736:
Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C135
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-22737:
Structure of the SARS-CoV-2 S 6P trimer in complex with the human neutralizing antibody Fab fragment, C144
Method: single particle / : Barnes CO, Esswein SR, Bjorkman PJ

PDB-7k8s:
Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C002 (state 1)
Method: single particle / : Barnes CO, Malyutin AG, Bjorkman PJ

PDB-7k8t:
Structure of the SARS-CoV-2 S 6P trimer in complex with the human neutralizing antibody Fab fragment, C002 (State 2)
Method: single particle / : Malyutin AG, Barnes CO, Bjorkman PJ

PDB-7k8u:
Structure of the SARS-CoV-2 S 6P trimer in complex with the human neutralizing antibody Fab fragment, C104
Method: single particle / : Barnes CO, Malyutin AG, Bjorkman PJ

PDB-7k8v:
Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C110
Method: single particle / : Dam KA, Barnes CO, Bjorkman PJ

PDB-7k8w:
Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C119
Method: single particle / : Sharaf NG, Barnes CO, Bjorkman PJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more