[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,326 items for (author: shan & s)

EMDB-44123:
Cryo-EM density of GluK2 amino-terminal domain (GluK2-ATD) from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to ConA
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44126:
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two concanavalin A dimers
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44127:
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one concanavalin A dimer
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-40865:
NUDT9-H domain focused cryo-EM map of TRPM2 chanzyme in the presence of Calcium and ADP-ribose
Method: single particle / : Huang Y, Kumar S, Lu W, Du J

EMDB-40866:
NUDT9-H domain focused cryo-EM map of TRPM2 chanzyme in the presence of Magnesium, Adenosine monophosphate, and Ribose-5-phosphate
Method: single particle / : Huang Y, Kumar S, Lu W, Du J

EMDB-40867:
NUDT9-H domain focused cryo-EM map of TRPM2 chanzyme in the presence of Magnesium, Adenosine monophosphate, and Ribose-5-phosphate
Method: single particle / : Huang Y, Sushant K, Lu W, Du J

EMDB-40868:
NUDT9-H domain focused cryo-EM map of TRPM2 chanzyme in the presence of Magnesium and ADP-ribose, open state
Method: single particle / : Huang Y, Kumar S, Lu W, Du J

EMDB-40869:
NUDT9-H domain focused cryo-EM map of TRPM2 chanzyme in the presence of Magnesium and ADP-ribose, closed state
Method: single particle / : Huang Y, Kumar S, Lu W, Du J

EMDB-40870:
NUDT9-H domain focused cryo-EM map of TRPM2 chanzyme in the presence of Magnesium, ADP-ribose, Adenosine monophosphate, and Ribose-5-phosphate, closed state
Method: single particle / : Huang Y, Kumar S, Lu W, Du J

EMDB-40871:
NUDT9-H domain focused cryo-EM map of TRPM2 chanzyme (E1114A) in the presence of Magnesium and ADP-ribose, open state
Method: single particle / : Huang Y, Kumar S, Lu W, Du J

EMDB-40872:
NUDT9-H domain focused cryo-EM map of TRPM2 chanzyme (E1114A) in the presence of Magnesium and ADP-ribose, closed state
Method: single particle / : Huang Y, Kumar S, Lu W, Du J

EMDB-40875:
Raw consensus map of TRPM2 chanzyme in the presence of Magnesium, Adenosine monophosphate, and Ribose-5-phosphate
Method: single particle / : Huang Y, Kumar S, Lu W, Du J

EMDB-40876:
Raw consensus map of TRPM2 chanzyme in the presence of Magnesium
Method: single particle / : Huang Y, Kumar S, Lu W, Du J

EMDB-40877:
Raw consensus map of TRPM2 chanzyme in the presence of Calcium
Method: single particle / : Huang Y, Kumar S, Lu W, Du J

EMDB-40878:
Raw consensus map of TRPM2 chanzyme in the presence of EDTA and ADP-ribose
Method: single particle / : Huang Y, Kumar S, Lu W, Du J

EMDB-40879:
Raw consensus map of TRPM2 chanzyme in the presence of Magnesium and ADP-ribose, open state
Method: single particle / : Huang Y, Kumar S, Lu W, Du J

EMDB-40880:
Raw consensus map of TRPM2 chanzyme in the presence of Magnesium and ADP-ribose, closed state
Method: single particle / : Huang Y, Kumar S, Lu W, Du J

EMDB-40881:
Raw consensus map of TRPM2 chanzyme in the presence of Magnesium, ADP-ribose, Adenosine monophosphate, and Ribose-5-phosphate, closed state
Method: single particle / : Huang Y, Kumar S, Lu W, Du J

EMDB-40883:
Raw consensus map of TRPM2 chanzyme in the presence of Magnesium, Adenosine monophosphate, and Ribose-5-phosphate
Method: single particle / : Huang Y, Kumar S, Lu W, Du J

EMDB-40887:
Raw consensus map of TRPM2 chanzyme (E1114A) in the presence of Magnesium and ADP-ribose, open state
Method: single particle / : Huang Y, Kumar S, Lu W, Du J

EMDB-40888:
Raw consensus map of TRPM2 chanzyme (E1114A) in the presence of Magnesium and ADP-ribose, closed state
Method: single particle / : Huang Y, Kumar S, Lu W, Du J

EMDB-40893:
Raw consensus map of TRPM2 chanzyme in the presence of Calcium and ADP-ribose.
Method: single particle / : Huang Y, Kumar S, Lu W, Du J

EMDB-40895:
Raw consensus map of TRPM2 chanzyme in the presence of EDTA (apo state)
Method: single particle / : Huang Y, Kumar S, Lu W, Du J

EMDB-38156:
Structure of enterovirus protease in complex host factor
Method: single particle / : Gao X, Cui S

PDB-8x8q:
Structure of enterovirus protease in complex host factor
Method: single particle / : Gao X, Cui S

EMDB-39064:
Structure of NET-Maprotiline in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

EMDB-39065:
Structure of NET-Nefopam in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

EMDB-39066:
Structure of NET-nomifensine in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

EMDB-39067:
structure of NET-Atomoxetine in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

EMDB-39068:
Structure of NET-Amitriptyline in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

EMDB-39069:
Structure of Apo human norepinephrine transporter NET
Method: single particle / : Zhang H, Xu HE, Jiang Y

EMDB-39070:
Structure of NET-NE in Occluded state
Method: single particle / : Zhang H, Xu HE, Jiang Y

EMDB-39533:
Structure of NET-Nisoxetine in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

PDB-8y8z:
Structure of NET-Maprotiline in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

PDB-8y90:
Structure of NET-Nefopam in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

PDB-8y91:
Structure of NET-nomifensine in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

PDB-8y92:
structure of NET-Atomoxetine in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

PDB-8y93:
Structure of NET-Amitriptyline in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

PDB-8y94:
Structure of Apo human norepinephrine transporter NET
Method: single particle / : Zhang H, Xu HE, Jiang Y

PDB-8y95:
Structure of NET-NE in Occluded state
Method: single particle / : Zhang H, Xu HE, Jiang Y

PDB-8yr2:
Structure of NET-Nisoxetine in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

EMDB-36987:
Structure of CUL3-RBX1-KLHL22 complex without CUL3 NA motif
Method: single particle / : Wang W, Ling L, Dai Z, Zuo P, Yin Y

PDB-8k9i:
Structure of CUL3-RBX1-KLHL22 complex without CUL3 NA motif
Method: single particle / : Wang W, Ling L, Dai Z, Zuo P, Yin Y

EMDB-41409:
Cryo-EM structure of PCSK9 mimic HIT01-K21Q-R218E with AMG145 Fab
Method: single particle / : Cheng J, Kwong PD

EMDB-40825:
10E8-GT10.2 immunogen in complex with human Fab 10E8 and mouse Fab W6-10
Method: single particle / : Huang J, Ozorowski G, Ward AB

PDB-8sx3:
10E8-GT10.2 immunogen in complex with human Fab 10E8 and mouse Fab W6-10
Method: single particle / : Huang J, Ozorowski G, Ward AB

EMDB-44124:
Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one ConA dimer. Type II interface between GluK2 ligand-binding domain and ConA
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44125:
Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two ConA dimers. Type I interface between GluK2 ligand-binding domain and ConA
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44128:
Ligand-binding and transmembrane domains of kainate receptor GluK2 in the open state, a complex with agonist glutamate and positive allosteric modulator BPAM344
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44129:
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two concanavalin A dimers. Composite map.
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more