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Showing 1 - 50 of 7,888 items for (author: san & j)

EMDB-69516:
In-cell map of mitoribosome from T cells of middle-aged patients after restimulation by subtomogram averaging
Method: subtomogram averaging / : Zhang X, Pan B, Su L, San J

EMDB-69519:
Tomogram of mitochondria in T cell from middle-aged patients after restimulation
Method: electron tomography / : Zhang X, Sang J, Su L, Pan B

EMDB-69521:
Tomogram of mitochondria in T cell from older patients after restimulation
Method: electron tomography / : Zhang X, Sang J, Su L, Pan B

EMDB-69523:
In-cell map of mitoribosome from T cells of older patients after restimulation by subtomogram averaging
Method: subtomogram averaging / : Zhang X, Pan B, Su L, Sang J

EMDB-69526:
In-cell map of electron transport chain supercomplex from T cells of middle-aged patients after restimulation by subtomogram averaging
Method: subtomogram averaging / : Zhang X, Pan B, Su L, Sang J

EMDB-69528:
In-cell map of electron transport chain supercomplex from T cells of older patients after restimulation by subtomogram averaging
Method: subtomogram averaging / : Zhang X, Pan B, Su L, Sang J

EMDB-72245:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP. Local map focused on Rad55/Rad57
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72246:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP. Local map focused on SHU
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72247:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP. Local map focused on Rad51
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72249:
Rad55-Rad57-SHU-Rad51-Rad51 bound to ssDNA with AMP-PNP. Composite map
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72252:
Rad55-Rad57(E161Q)-SHU-Rad51-Rad51 bound to ssDNA with ATP. Local map focused on Rad55/Rad57
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72253:
Rad55-Rad57(E161Q)-SHU-Rad51-Rad51 bound to ssDNA with ATP. Local map focused on SHU
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72254:
Rad55-Rad57(E161Q)-SHU-Rad51-Rad51 bound to ssDNA with ATP. Local map focused on Rad51
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72259:
Rad55-Rad57(E161Q)-SHU-Rad51-Rad51 bound to ssDNA with ATP. Composite map
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72261:
Rad55-Rad57(E161Q)-SHU-3xRad51 bound to ssDNA with ATP. Local map focused on Rad55/Rad57
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72262:
Rad55-Rad57(E161Q)-SHU-3xRad51 bound to ssDNA with ATP. Local map focused on SHU
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72263:
Rad55-Rad57(E161Q)-SHU-3xRad51 bound to ssDNA with ATP. Local map focused on Rad51
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72264:
Rad55-Rad57(E161Q)-SHU-3xRad51 bound to ssDNA with ATP. Composite map
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72270:
Rad55-Rad57-SHU homologous recombination complex. Composite map
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-48852:
Vibrio cholerae Glycine Riboswitch - Apo at 3.3A resolution
Method: single particle / : Jespersen N, Singhal A, Prajapati JD, Sanbonmatsu K

PDB-9n3j:
Vibrio cholerae Glycine Riboswitch - Apo at 3.3A resolution
Method: single particle / : Jespersen N, Singhal A, Prajapati JD, Sanbonmatsu K

EMDB-69908:
Cryo-EM structure of TRP melastatin channel in the desensitized state, with icilin (10min)
Method: single particle / : Kim SH, Park H, Lee HH

EMDB-69909:
Cryo-EM structure of TRP melastatin channel with icilin (10min)
Method: single particle / : Kim SH, Park H, Lee HH

EMDB-69929:
Cryo-EM structure of TRP melastatin channel in the putative intermediate 3, without CHS
Method: single particle / : Kim SH, Park H, Lee HH

EMDB-69930:
Cryo-EM structure of TRP melastatin channel in the putative desensitized state, without CHS
Method: single particle / : Kim SH, Park H, Lee HH

EMDB-69932:
Cryo-EM structure of TRP melastatin channel in the putative intermediate 2 state, with EGTA
Method: single particle / : Kim SH, Park H, Lee HH

EMDB-69933:
Cryo-EM structure of TRP melastatin channel in the putative twofold intermediate 1 state, with EGTA
Method: single particle / : Kim SH, Park H, Lee HH

EMDB-69934:
Cryo-EM structure of TRP melastatin channel in the putative desensitized state, with EGTA
Method: single particle / : Kim SH, Park H, Lee HH

EMDB-52554:
70S map (consensus map) for:"70S ribosome of marine cold bacterium Pseudoalteromonas translucida (P. haloplanktis) TAC125.
Method: single particle / : Singh V, Emmerich AG, Majumdar S, Sanyal S

EMDB-55929:
Structure of human CLN8 in an apo-state
Method: single particle / : Lacabanne D, Sheokand PK, Ruprecht JJ, Petkevicius K

EMDB-56021:
Structure of human CLN8 in the presence of docosahexaenoate
Method: single particle / : Lacabanne D, Sheokand PK, Ruprecht JJ, Petkevicius K

EMDB-56022:
Structure of human CLN8 in the presence of oleate
Method: single particle / : Lacabanne D, Sheokand PK, Ruprecht JJ, Petkevicius K

EMDB-48851:
Vibrio cholerae Glycine Riboswitch - glycine bound at 2.9A resolution
Method: single particle / : Jespersen N, Singhal A, Prajapati JD, Sanbonmatsu K

PDB-9n3i:
Vibrio cholerae Glycine Riboswitch - glycine bound at 2.9A resolution
Method: single particle / : Jespersen N, Singhal A, Prajapati JD, Sanbonmatsu K

EMDB-52555:
50S-focused map for:"70S ribosome of marine cold bacterium Pseudoalteromonas translucida (P. haloplanktis)TAC125.
Method: single particle / : Singh V, Emmerich AG, Majumdar S, Sanyal S

EMDB-52556:
30S-focused map for:"70S ribosome of marine cold bacterium Pseudoalteromonas translucida (P. haloplanktis)TAC125.
Method: single particle / : Singh V, Emmerich AG, Majumdar S, Sanyal S

EMDB-58853:
CryoEM structure of the E494A Quinol-Dependent Nitric Oxide Reductase
Method: single particle / : Khaja F, Antonyuk SV, Muench SP, Hsanain SS

PDB-32fi:
CryoEM structure of the E494A Quinol-Dependent Nitric Oxide Reductase
Method: single particle / : Khaja F, Antonyuk SV, Muench SP, Hsanain SS

EMDB-76463:
Locally refined cryo-EM structure of human cannabinoid receptor 2 with agonist '5249
Method: single particle / : Sacco M, Wu C, Singal B, Skiniotis G

EMDB-76464:
Cryo-EM structure of human cannabinoid receptor 2-Gi complex with agonist '5249
Method: single particle / : Sacco M, Wu C, Singal B, Skiniotis G

EMDB-76465:
Cryo-EM structure of human cannabinoid receptor 2-Gi complex with agonist '1029
Method: single particle / : Sacco M, Wu C, Singal B, Skiniotis G

PDB-12iy:
Locally refined cryo-EM structure of human cannabinoid receptor 2 with agonist '5249
Method: single particle / : Sacco M, Wu C, Singal B, Skiniotis G

PDB-12iz:
Cryo-EM structure of human cannabinoid receptor 2-Gi complex with agonist '5249
Method: single particle / : Sacco M, Wu C, Singal B, Skiniotis G

PDB-12ja:
Cryo-EM structure of human cannabinoid receptor 2-Gi complex with agonist '1029
Method: single particle / : Sacco M, Wu C, Singal B, Skiniotis G

EMDB-77586:
Salmonella Flagellar Export Gate with FlhB in the context of the intact basal body
Method: single particle / : Johnson S, Johnson MK, Lea SM

EMDB-77588:
Salmonella Flagellar Export Apparatus FlhA transmembrane domain nonamer in the context of the intact basal body
Method: single particle / : Johnson S, Johnson MK, Lea SM

EMDB-77603:
Salmonella Flagellar Export Apparatus (FliPQR/FlhB/FlhA) in the context of the intact basal body
Method: single particle / : Johnson S, Johnson MK, Lea SM

PDB-36hu:
Salmonella Flagellar Export Gate with FlhB in the context of the intact basal body
Method: single particle / : Johnson S, Johnson MK, Lea SM

PDB-36hw:
Salmonella Flagellar Export Apparatus FlhA transmembrane domain nonamer in the context of the intact basal body
Method: single particle / : Johnson S, Johnson MK, Lea SM

PDB-36is:
Salmonella Flagellar Export Apparatus (FliPQR/FlhB/FlhA) in the context of the intact basal body
Method: single particle / : Johnson S, Johnson MK, Lea SM

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External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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