[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 95 items for (author: rogers & s)

EMDB-49952:
Dimerized subunit pair: modular DNA origami subunit with top = 14 poly-T, bottom = 3 poly-T overhangs
Method: single particle / : Videbaek TE, Wei WS, Rogers WB, Fraden S

EMDB-49953:
Dimerized subunit pair: modular DNA origami subunit with top = 3 poly-T, bottom = 3 poly-T overhangs
Method: single particle / : Videbaek TE, Wei WS, Rogers WB, Fraden S

EMDB-48633:
DNA-origami colloid for self-assembly of tubules: (10,0) monomer, bound pair from side 1 interaction
Method: single particle / : Videbaek TE, Rogers WB

EMDB-48634:
DNA-origami colloid for self-assembly of tubules: (10,0) monomer, bound pair from side 2 interaction
Method: single particle / : Videbaek TE, Rogers WB

EMDB-48635:
DNA-origami colloid for self-assembly of tubules: (10,0) monomer, bound pair from side 3 interaction
Method: single particle / : Videbaek TE, Rogers WB

EMDB-48636:
DNA-origami colloid for self-assembly of tubules: (10,0) monomer, bound hexamer
Method: single particle / : Videbaek TE, Rogers WB

EMDB-48637:
DNA-origami colloid for self-assembly of tubules: (10,0) monomer, twist corrected
Method: single particle / : Videbaek TE, Rogers WB

EMDB-48565:
Modular DNA origami building block for self-assembly: dimer with 10 base pair arm
Method: single particle / : Videbaek TE, Hayakawa D, Saha R, Rogers WB, Fraden S

EMDB-48566:
Modular DNA origami building block for self-assembly: dimer with 6 base pair arm
Method: single particle / : Videbaek TE, Hayakawa D, Saha R, Rogers WB, Fraden S

EMDB-48567:
Modular DNA origami building block for self-assembly: dimer with 10 base pair arm, negative binding angle
Method: single particle / : Videbaek TE, Hayakawa D, Saha R, Rogers WB, Fraden S

EMDB-48569:
Modular DNA origami building block for self-assembly
Method: single particle / : Videbaek TE, Hayakawa D, Saha R, Rogers WB, Fraden S

EMDB-41869:
BG505.664 SOSIP in complex with polyclonal antibodies from NHP 8131 (gp120 glycan hole, gp41 glycan hole/fusion peptide and trimer base epitopes)
Method: single particle / : Zhang S, Ward AB

EMDB-41870:
BG505.664 Env SOSIP in complex with polyclonal antibodies from NHP 8131 (gp120-gp120 interface epitope)
Method: single particle / : Zhang S, Ward AB

EMDB-41871:
BG505.664 Env SOSIP in complex with polyclonal antibodies from NHP 8147 (C3/V5, V1/V2/V3 apex, gp41 glycan hole/fusion peptide and trimer base epitopes)
Method: single particle / : Zhang S, Ward AB

EMDB-41872:
BG505.664 Env SOSIP in complex with polyclonal antibodies from NHP 8147 (gp120 glycan hole epitope)
Method: single particle / : Zhang S, Ward AB

EMDB-41972:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP A12N030 (CD4bs, C3V5 and base epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41973:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP A12N030 (gp41GH/FP and base epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41974:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP DC8G (gp41GH/FP and gp120GH epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41975:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP DC8G (gp120GH and base epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41976:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP DC8G (V1V2V3 and gp120GH epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41977:
GT1.1 SOSIP-CC2 in complex with wk80 polyclonal antibodies from NHP 8229 (V1V2V3, C3V5, CD4bs, gp41GH/FP and base epitopes)
Method: single particle / : Sewell LM, Ozorowski G, Ward AB

EMDB-41978:
GT1.1 SOSIP-CC2 in complex with wk80 polyclonal antibodies from NHP 8239 (gp120GH, gp41GH/FP, CD4bs, and base epitopes)
Method: single particle / : Sewell LM, Ozorowski G, Ward AB

EMDB-40796:
BG505 GT1.1 SOSIP in complex with NHP Fabs 12C11 and RM20A3
Method: single particle / : Zhang S, Torres JL, Ozorowski G, Ward AB

PDB-8sw3:
BG505 GT1.1 SOSIP in complex with NHP Fabs 12C11 and RM20A3
Method: single particle / : Zhang S, Torres JL, Ozorowski G, Ward AB

EMDB-40812:
Structure of SARS-CoV-2 (HP-GSAS-Mut7) spike in complex with TXG-0078 Fab -Conformation 1
Method: single particle / : Bangaru S, Ward AB

EMDB-40813:
Structure of SARS-CoV-2 (HP-GSAS-Mut7) spike in complex with TXG-0078 Fab -Conformation 2
Method: single particle / : Bangaru S, Ward AB

EMDB-40797:
BG505 GT1.1 SOSIP in complex with NHP Fabs 21N13, 21M20 and RM20A3
Method: single particle / : Ozorowski G, Torres JL, Zhang S, Ward AB

PDB-8sw4:
BG505 GT1.1 SOSIP in complex with NHP Fabs 21N13, 21M20 and RM20A3
Method: single particle / : Ozorowski G, Torres JL, Zhang S, Ward AB

EMDB-40814:
Local refinement of SARS-CoV-2 (HP-GSAS-Mut7) spike NTD in complex with TXG-0078 Fab
Method: single particle / : Bangaru B, Ward A

PDB-8swh:
Local refinement of SARS-CoV-2 (HP-GSAS-Mut7) spike NTD in complex with TXG-0078 Fab
Method: single particle / : Bangaru B, Ward A

EMDB-40480:
TUBB4B and TUBA1A Heterodimer from Human Respiratory Doublet Microtubules
Method: single particle / : Anderson JR, Gui M, Brown A

PDB-8sh7:
TUBB4B and TUBA1A Heterodimer from Human Respiratory Doublet Microtubules
Method: single particle / : Anderson JR, Gui M, Brown A

EMDB-43226:
DNA origami colloid for self-assembly of tubules: (6,0) monomer
Method: single particle / : Videbaek TE, Rogers WB

EMDB-43227:
DNA origami colloid for self-assembly of tubules: (10,0) monomer
Method: single particle / : Videbaek TE, Rogers WB

EMDB-18475:
Cryo-electron tomogram of an induced S2 cell protrusion. The cell was treated with 2uM thapsigargin (5h) and with 2.5uM Cytochalasin D (2h).
Method: electron tomography / : Ventura Santos C, Carter AP

EMDB-16877:
Subtomogram averaging structure of cofilactin filament inside microtubule lumen of Drosophila S2 cell protrusion.
Method: subtomogram averaging / : Ventura Santos C, Carter AP

PDB-8oh4:
Subtomogram averaging structure of cofilactin filament inside microtubule lumen of Drosophila S2 cell protrusion.
Method: subtomogram averaging / : Ventura Santos C, Carter AP

EMDB-16685:
Tomogram of an induced protrusion of a Drosophila S2 cell
Method: electron tomography / : Ventura Santos C, Carter AP

EMDB-16693:
Tomogram of an induced protrusion of a Drosophila S2 cell
Method: electron tomography / : Ventura Santos C, Carter AP

EMDB-16695:
Tomogram of an induced protrusion of a Drosophila S2 alpha-tubulin acetyltransferase knock-out (dTAT KO) cell with a filament inside the microtubule lumen
Method: electron tomography / : Ventura Santos C, Carter AP

EMDB-16720:
Tomogram of an induced protrusion of a Drosophila S2 cell with filaments inside the microtubule lumen.
Method: electron tomography / : Ventura Santos C, Carter AP

EMDB-16800:
Tomogram of an induced protrusion of a cofilin knock-down Drosophila S2 cell with filaments inside the microtubule lumen
Method: electron tomography / : Ventura Santos C, Carter AP

EMDB-16811:
Tomogram of an induced protrusion of a cofilin knock-down Drosophila S2 cell with a filament inside the microtubule lumen.
Method: electron tomography / : Ventura Santos C, Carter AP

EMDB-26847:
Geometrically programmed DNA origami colloid for self-assembly of tubules: V-particle
Method: single particle / : Hayakawa D, Videbaek TE, Hall DM, Fang H, Sigl C, Feigl E, Dietz H, Fraden S, Hagan MF, Grason GM, Rogers WB

EMDB-26848:
Geometrically programmed DNA origami colloid for self-assembly of tubules: X-particle
Method: single particle / : Hayakawa D, Videbaek TE, Hall DM, Fang H, Sigl C, Feigl E, Dietz H, Fraden S, Hagan MF, Grason GM, Rogers WB

EMDB-26849:
Geometrically programmed DNA origami colloid for self-assembly of tubules: A-particle
Method: single particle / : Hayakawa D, Videbaek TE, Hall DM, Fang H, Sigl C, Feigl E, Dietz H, Fraden S, Hagan MF, Grason GM, Rogers WB

EMDB-26850:
Geometrically programmed DNA origami colloid for self-assembly of tubules: B-particle
Method: single particle / : Hayakawa D, Videbaek TE, Hall DM, Fang H, Sigl C, Feigl E, Dietz H, Fraden S, Hagan MF, Grason GM, Rogers WB

EMDB-24762:
in situ cryo-electron tomogram of wild-type yeast lipid droplet in 2% glucose-fed log growth conditions
Method: electron tomography / : Rogers S, Gui L, Kovalenko A, Reetz E, Nicastro D, Henne WM

EMDB-24764:
in situ cryo-electron tomogram of wild-type yeast lipid droplet after 4-hour exposure to acute glucose restriction (AGR, 0.001% glucose media)
Method: electron tomography / : Rogers S, Gui L, Kovalenko A, Reetz E, Nicastro D, Henne WM

EMDB-24766:
in situ cryo-electron tomogram of wild-type yeast lipid droplet after 4-hour exposure to acute glucose restriction (AGR, 0.001% glucose media) with 0.1% oleic acid
Method: electron tomography / : Rogers S, Gui L, Kovalenko A, Reetz E, Nicastro D, Henne WM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more