[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 23 items for (author: pennington & j)

EMDB-29216:
Nodavirus RNA replication crown from baculovirus-expressed viral protein A plus RNA1 template
Method: subtomogram averaging / : Zhan H, Unchwaniwala N, Rebolledo Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon J, Grant T, Ahlquist P

EMDB-29217:
Nodavirus RNA replication proto-crown from baculovirus-expressed viral protein A minus RNA1 template
Method: subtomogram averaging / : Zhan H, Unchwaniwala N, Rebolledo Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon J, Grant T, Ahlquist P

EMDB-29218:
Nodavirus RNA replication crown from flock house virus-infected cells
Method: subtomogram averaging / : Zhan H, Unchwaniwala N, Rebolledo Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon J, Grant T, Ahlquist P

EMDB-29289:
Nodavirus RNA replication proto-crown, detergent-solubliized C12 multimer
Method: single particle / : Zhan H, Unchwaniwala N, Rebolledo Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon J, Grant T, Ahlquist P

EMDB-29290:
Nodavirus RNA replication proto-crown, detergent-solubliized C11 multimer
Method: single particle / : Zhan H, Unchwaniwala N, Rebolledo Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon J, Grant T, Ahlquist P

EMDB-29291:
Nodavirus RNA replication protein A polymerase domain, local refinement
Method: single particle / : Zhan H, Unchwaniwala N, Rebolledo Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon J, Grant T, Ahlquist P

PDB-8fm9:
Nodavirus RNA replication proto-crown, detergent-solubliized C12 multimer
Method: single particle / : Zhan H, Unchwaniwala N, Rebolledo Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon J, Grant T, Ahlquist P

PDB-8fma:
Nodavirus RNA replication proto-crown, detergent-solubliized C11 multimer
Method: single particle / : Zhan H, Unchwaniwala N, Rebolledo Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon J, Grant T, Ahlquist P

PDB-8fmb:
Nodavirus RNA replication protein A polymerase domain, local refinement
Method: single particle / : Zhan H, Unchwaniwala N, Rebolledo Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon J, Grant T, Ahlquist P

EMDB-28995:
Nodavirus RNA replication crown from BSRT7/5 cells expressing viral protein A and fsRNA1 template in absence of B2
Method: subtomogram averaging / : den Boon J, Zhan H, Unchwaniwala N, Horswill M, Slavik K, Pennington J, Navine A, Ahlquist P

EMDB-28996:
Nodavirus RNA replication crown from BSRT7/5 cells expressing viral protein A and fsRNA1 template in presence of B2
Method: subtomogram averaging / : den Boon J, Zhan H, Unchwaniwala N, Horswill M, Slavik K, Pennington J, Navine A, Ahlquist P

EMDB-25136:
Structure of a partially disrupted IgE high affinity receptor complex bound to an omalizumab variant
Method: single particle / : Pennington LF, Jardetzky TS

PDB-7sht:
Structure of a partially disrupted IgE high affinity receptor complex bound to an omalizumab variant
Method: single particle / : Pennington LF, Jardetzky TS

EMDB-22129:
Nodavirus RNA replication complex crown
Method: subtomogram averaging / : Unchwaniwala N, Zhan H, Pennington J, Horswill M, den Boon J, Ahlquist P

EMDB-22137:
Complex of SARS-CoV-2 receptor binding domain with the Fab fragments of two neutralizing antibodies
Method: single particle / : Franklin MC, Saotome K, Romero Hernandez A, Zhou Y

PDB-6xdg:
Complex of SARS-CoV-2 receptor binding domain with the Fab fragments of two neutralizing antibodies
Method: single particle / : Franklin MC, Saotome K, Romero Hernandez A, Zhou Y

EMDB-6075:
Reconstruction of the N-terminal domain of C. elegans TFG
Method: single particle / : Johnson A, Bhattacharya N, Hanna M, Schuh AL, Pennington JG, Otegui MS, Stagg SM, Audhya A

EMDB-6076:
Reconstruction of the N-terminal domain of human TFG
Method: single particle / : Johnson A, Bhattacharya N, Hanna M, Schuh AL, Pennington JG, Otegui MS, Stagg SM, Audhya A

PDB-3j42:
Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody
Method: single particle / : Wang Z, Pennington JG, Jiang W, Rossmann MG

EMDB-5674:
Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody
Method: single particle / : Wang Z, Li L, Penningtona JG, Sheng J, Yap M, Plevk P, Meng G, Sun L, Jiang W, Rossmann MG

EMDB-5675:
Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody
Method: single particle / : Wang Z, Li L, Penningtona JG, Sheng J, Yap M, Plevk P, Meng G, Sun L, Jiang W, Rossmann MG

EMDB-5676:
Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody
Method: single particle / : Wang Z, Li L, Penningtona JG, Sheng J, Yap M, Plevk P, Meng G, Sun L, Jiang W, Rossmann MG

EMDB-5677:
Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody
Method: single particle / : Wang Z, Li L, Penningtona JG, Sheng J, Yap M, Plevk P, Meng G, Sun L, Jiang W, Rossmann MG

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more