[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 194 items for (author: park & yj)

EMDB-62911:
Cryo-EM structure of apo GPR50 with BRIL fusion, anti-BRIL Fab, and anti-Fab Nb complex
Method: single particle / : Shin J, Cho Y

EMDB-45969:
Local refinement of the SARS-CoV-2 BA.2.86 RBD in complex with TRI2-2 minibinder
Method: single particle / : Lee J, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-45971:
Local refinement of the SARS-CoV-2 BA.2.86 NTD
Method: single particle / : Lee J, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-45972:
SARS-CoV-2 BA.2.86 Spike trimer in complex with TRI2-2 minibinder
Method: single particle / : Lee J, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-73973:
Streptomyces coelicolor UmbA4 complex
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Mougous JD, Veesler D

EMDB-49486:
MARV GP in complex with MARV16 Fab
Method: single particle / : Addetia A, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-63376:
Consensus map of the TBC-DE-Arl2-beta-tubulin complex with GTP
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63377:
Local refinement map of Arl2 in the TBC-DE-Arl2-beta-tubulin-GTP complex
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63378:
Local refinement map of AR3 domain in the TBC-DE-Arl2-beta-tubulin-GTP complex
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63546:
Consensus map of the TBC-DE-Arl2-alpha-beta-tubulin complex with GTP
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63547:
Local refinement map of TBCE and alpha-tubulin in the TBC-DE-Arl2-alpha-beta-tubulin-GTP complex
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63548:
Local refinement map of Arl2 and TBCD-AR1 domain in the TBC-DE-Arl2-alpha-beta-tubulin-GTP complex
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63549:
Consensus map of the TBC-DEC-Arl2-alpha-beta-tubulin complex with GDP-AlFx
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63550:
Local refinement map of TBCE in the TBC-DEC-Arl2-alpha-beta-tubulin-GDP-AlFx complex
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63551:
Local refinement map of TBCE and alpha-tubulin in the TBC-DEC-alpha-beta-tubulin-GDP-AlFx complex
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63552:
Local refinement map of TBCC-RPD and Arl2 in the TBC-DEC-Arl2-alpha-beta-tubulin-GDP-AlFx complex
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63553:
Local refinement map of TBCD and Arl2 in the TBC-DEC-Arl2-alpha-beta-tubulin-GDP-AlFx complex
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63554:
Consensus map of the TBC-DC-Arl2-alpha-beta-tubulin complex with GDP-AlFx
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63555:
Local refinement map of alpha-tubulin in the TBC-DC-Arl2-alpha-beta-tubulin-GDP-AlFx complex
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63556:
Local refinement map of TBCD and Arl2 in the TBC-DC-Arl2-alpha-beta-tubulin-GDP-AlFx complex
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63557:
Local refinement map of TBCC-RPD and Arl2 in the TBC-DC-Arl2-alpha-beta-tubulin-GDP-AlFx complex
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63558:
Local refinement map of TBCD AR3 domain in the TBC-DC-Arl2-alpha-beta-tubulin-GDP-AlFx complex
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63569:
Consensus map of the TBC-DE-Arl2-beta-tubulin complex
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63570:
Local refinement map of TBCE-LRRD in the TBC-DE-Arl2-beta-tubulin complex
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63572:
Cryo-EM structure of the TBC-D-Arl2-beta-tubulin complex
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63573:
Cryo-EM structure of the TBC-DE-Arl2-beta-tubulin complex
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63574:
Cryo-EM structure of the TBC-DE-Arl2-beta-tubulin complex with GTP
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63575:
Cryo-EM structure of the TBC-DE-Arl2-alpha-beta-tubulin complex with GTP
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63576:
Cryo-EM structure of the TBC-DEC-Arl2-alpha-beta-tubulin complex with GDP-AlFx
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-63577:
Cryo-EM structure of the TBC-DC-Arl2-alpha-beta-tubulin complex with GDP-AlFx
Method: single particle / : Seong YJ, Kim HM, Byun KM, Park YW, Roh SH

EMDB-49092:
Structure of the Rattus norvegicus ACE2 receptor bound HsItaly2011 RBD complex
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-49093:
Eptesicus fuscus ACE2 peptidase domain bound to VsCoV-a7 RBD complex
Method: single particle / : Park YJ, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-49635:
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosomal subunit (local refinement of the 40S body)
Method: single particle / : Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-49636:
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
Method: single particle / : Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-49637:
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (consensus map)
Method: single particle / : Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-60841:
Consensus map of acetyltransferase
Method: single particle / : Park JB, Roh SH

EMDB-60842:
AGD-Focused map
Method: single particle / : Park JB, Roh SH

EMDB-60843:
GNATD focused acetyltransferase
Method: single particle / : Park JB, Rho SH

EMDB-60844:
RD of acetyltransferase
Method: single particle / : Park JB, Roh SH

EMDB-60845:
Consensus map of ligand bound acetyltransferase
Method: single particle / : Park JB, Roh SH

EMDB-60846:
AGD of acetyltransferase
Method: single particle / : Park JB, Roh SH

EMDB-60847:
GNATD of acetyltransferase
Method: single particle / : Park JB, Roh SH

EMDB-60848:
RD of acetyltransferase
Method: single particle / : Park JB, Roh SH

EMDB-60849:
Apo-state E.coli PatZ
Method: single particle / : Park JB, Roh SH

EMDB-60853:
Liganded-state E.coli PatZ
Method: single particle / : Park JB, Roh SH

EMDB-45253:
Merbecovirus MOW15-22 Spike glycoprotein RBD bound to the P. davyi ACE2
Method: single particle / : Park YJ, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-47823:
Structure of the prefusion HKU5-19s Spike trimer (conformation 1)
Method: single particle / : Park YJ, Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-48048:
Structure of the prefusion HKU5-19s Spike trimer (conformation 2)
Method: single particle / : Park YJ, Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-46512:
Structure of the HKU5 RBD bound to the P. abramus ACE2 receptor
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more