[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 85 items for (author: pantucek & r)

EMDB-18949:
Neck and tail of phage 812 virion (composite)
Method: single particle / : Cienikova Z, Novacek J, Fuzik T, Benesik M, Plevka P

EMDB-18912:
Neck-tail junction of phage 812 virion (C6)
Method: single particle / : Cienikova Z, Novacek J, Fuzik T, Benesik M, Plevka P

EMDB-18919:
Consensus density for neck and tail of phage 812 virion (C6)
Method: single particle / : Cienikova Z, Novacek J, Fuzik T, Benesik M, Plevka P

EMDB-18516:
Tail channel of phage 812 virion (C1)
Method: single particle / : Cienikova Z, Novacek J, Fuzik T, Benesik M, Plevka P

EMDB-18489:
Tail channel of phage 812 virion (C3)
Method: single particle / : Cienikova Z, Novacek J, Fuzik T, Benesik M, Plevka P

EMDB-18445:
Neck of phage 812 virion (C12)
Method: single particle / : Cienikova Z, Novacek J, Fuzik T, Benesik M, Plevka P

EMDB-18462:
Neck of phage 812 virion (C6)
Method: single particle / : Cienikova Z, Novacek J, Fuzik T, Benesik M, Plevka P

EMDB-18395:
Portal and anchor DNA of phage 812 after tail contraction (C1)
Method: single particle / : Cienikova Z, Siborova M, Fuzik T, Plevka P

EMDB-18369:
Neck and tail of phage 812 after tail contraction (composite)
Method: single particle / : Cienikova Z, Siborova M, Fuzik T, Plevka P

EMDB-18372:
Neck channel of phage 812 after tail contraction (C1)
Method: single particle / : Cienikova Z, Siborova M, Fuzik T, Plevka P

EMDB-18385:
Consensus density for neck and tail of phage 812 after tail contraction (C6)
Method: single particle / : Cienikova Z, Siborova M, Fuzik T, Plevka P

EMDB-18213:
Neck of phage 812 after tail contraction (C12)
Method: single particle / : Cienikova Z, Siborova M, Fuzik T, Plevka P

EMDB-18065:
Neck-tail junction of phage 812 after tail contraction (C6)
Method: single particle / : Cienikova Z, Siborova M, Fuzik T, Plevka P

EMDB-18048:
Neck of phage 812 after tail contraction (C6)
Method: single particle / : Cienikova Z, Siborova M, Fuzik T, Plevka P

EMDB-10565:
Capsid of empty GTA particle computed with C5 symmetry
Method: single particle / : Bardy P, Fuzik T

EMDB-10592:
Virion of empty GTA particle
Method: single particle / : Bardy P, Fuzik T

PDB-6tui:
Virion of empty GTA particle
Method: single particle / : Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P

EMDB-10442:
Capsid of native GTA particle computed with C5 symmetry
Method: single particle / : Bardy P, Fuzik T

EMDB-10443:
Virion of native gene transfer agent (GTA) particle
Method: single particle / : Bardy P, Fuzik T

EMDB-10476:
Neck of native GTA particle computed with C12 symmetry
Method: single particle / : Bardy P, Fuzik T

EMDB-10477:
Neck of native GTA particle computed with C6 symmetry
Method: single particle / : Bardy P, Fuzik T

EMDB-10478:
Tail of native GTA particle computed with helical refinement, C6 symmetry
Method: helical / : Bardy P, Fuzik T

EMDB-10479:
Tail-baseplate interface of native GTA particle computed with C6 symmetry
Method: single particle / : Bardy P, Fuzik T

EMDB-10490:
Baseplate of native GTA particle computed with C3 symmetry
Method: single particle / : Bardy P, Fuzik T

EMDB-10541:
Neck of empty GTA particle computed with C12 symmetry
Method: single particle / : Bardy P, Fuzik T

EMDB-10542:
Neck of empty GTA particle computed with C6 symmetry
Method: single particle / : Bardy P, Fuzik T

EMDB-10566:
Tail of empty GTA particle computed with helical refinement, C6 symmetry
Method: helical / : Bardy P, Fuzik T

EMDB-10567:
Isometric capsid of empty GTA particle computed with I4(I,n25r) symmetry
Method: single particle / : Bardy P, Fuzik T

EMDB-10568:
Capsid-neck interface of native GTA particle, asymmetric reconstruction
Method: single particle / : Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P

EMDB-10569:
Capsid-neck interface of empty GTA particle, asymmetric reconstruction
Method: single particle / : Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P

EMDB-10570:
Tail tube of native GTA particle computed with C3 symmetry
Method: single particle / : Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P

EMDB-10571:
Baseplate of empty GTA particle computed with C3 symmetry
Method: single particle / : Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P

EMDB-10572:
Baseplate of native GTA particle, asymmetric reconstruction
Method: single particle / : Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P

PDB-6tb9:
Capsid of native GTA particle computed with C5 symmetry
Method: single particle / : Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P

PDB-6tba:
Virion of native gene transfer agent (GTA) particle
Method: single particle / : Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P

PDB-6te8:
Neck of native GTA particle computed with C12 symmetry
Method: single particle / : Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P

PDB-6te9:
Neck of native GTA particle computed with C6 symmetry
Method: single particle / : Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P

PDB-6tea:
Tail of native GTA particle computed with helical refinement, C6 symmetry
Method: helical / : Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P

PDB-6teb:
Tail-baseplate interface of native GTA particle computed with C6 symmetry
Method: single particle / : Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P

PDB-6teh:
Baseplate of native GTA particle computed with C3 symmetry
Method: single particle / : Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P

PDB-6to8:
Neck of empty GTA particle computed with C12 symmetry
Method: single particle / : Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P

PDB-6toa:
Neck of empty GTA particle computed with C6 symmetry
Method: single particle / : Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P

PDB-6tsu:
Capsid of empty GTA particle computed with C5 symmetry
Method: single particle / : Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P

PDB-6tsv:
Tail of empty GTA particle computed with helical refinement, C6 symmetry
Method: helical / : Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P

PDB-6tsw:
Isometric capsid of empty GTA particle computed with I4(I,n25r) symmetry
Method: single particle / : Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P

EMDB-4454:
Dodecameric reconstruction of portal and tail of genome release intermediate state of bacteriophage P68
Method: single particle / : Hrebik D, Skubnik K, Fuzik T, Plevka P

EMDB-4455:
Dodecameric reconstruction of portal and tail of genome release intermediate state of bacteriophage P68 (subset with tailknob)
Method: single particle / : Hrebik D, Skubnik K, Fuzik T, Plevka P

EMDB-4435:
Portal and tail of native bacteriophage P68
Method: single particle / : Hrebik D, Skubnik K

EMDB-4436:
Five-fold symmetrized map of native bacteriophage P68
Method: single particle / : Hrebik D, Skubnik K, Fuzik T, Plevka P

EMDB-4437:
Asymmetric map of native bacteriophage P68
Method: single particle / : Hrebik D, Skubnik K, Fuzik T, Plevka P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more