[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 86 items for (author: ooi & ee)

EMDB-48922:
Endogenous Pfs230D13-14 in complex with Pfs48/45 bound to anti-Pfs48/45 Fabs RUPA-71 and RUPA-44
Method: single particle / : Hailemariam S, Heide F, Bekkering E, Ivanochko D, Yoo R, Julien JP

PDB-9n5i:
Endogenous Pfs230D13-14 in complex with Pfs48/45 bound to anti-Pfs48/45 Fabs RUPA-71 and RUPA-44
Method: single particle / : Hailemariam S, Heide F, Bekkering E, Ivanochko D, Yoo R, Julien JP

EMDB-48921:
Endogenous Pfs230D1-6 in complex with RUPA-97, LMIV230-01, and 2A2 Fab domains
Method: single particle / : Heide F, Yoo R, Ivanochko D, Hailemariam S, Bekkering E, Julien JP

EMDB-48924:
Endogenous Pfs230D9-14 in complex with Pfs48/45
Method: single particle / : Heide F, Ivanochko D, Bekkering E, Yoo R, Hailemariam S, Julien JP

EMDB-48941:
Endogenous Pfs230D7-8 in complex with 18F25
Method: single particle / : Jackman JJ, Yoo R, Ivanochko D, Hailemariam S, Bekkering E, Julien JP

PDB-9n5h:
Endogenous Pfs230D1-6 in complex with RUPA-97, LMIV230-01, and 2A2 Fab domains
Method: single particle / : Heide F, Yoo R, Ivanochko D, Hailemariam S, Bekkering E, Julien JP

PDB-9n5k:
Endogenous Pfs230D9-14 in complex with Pfs48/45
Method: single particle / : Heide F, Ivanochko D, Bekkering E, Yoo R, Hailemariam S, Julien JP

PDB-9n5o:
Endogenous Pfs230D7-8 in complex with 18F25
Method: single particle / : Jackman JJ, Yoo R, Ivanochko D, Hailemariam S, Bekkering E, Julien JP

EMDB-44962:
Tetrameric Complex of full-length HIV-1 integrase protein bound to the integrase binding domain of LEDGF/p75
Method: single particle / : Jing T, Shan Z, Lyumkis D, Biswas A

EMDB-45103:
Consensus map of NL4-3 WT HIV-1 intasome
Method: single particle / : Lyumkis D, Jing T, Zhang Z

EMDB-45104:
Top half of NL4-3 WT HIV-1 intasome
Method: single particle / : Lyumkis D, Jing T, Zhang Z

EMDB-45150:
Bottom half of NL4-3 WT HIV-1 intasome
Method: single particle / : Lyumkis D, Jing T, Zhang Z

EMDB-45151:
Hexadecamer of NL4-3 WT HIV-1 intasome
Method: single particle / : Lyumkis D, Jing T, Zhang Z, Biswas A

PDB-9bw9:
Tetrameric Complex of full-length HIV-1 integrase protein bound to the integrase binding domain of LEDGF/p75
Method: single particle / : Jing T, Shan Z, Lyumkis D, Biswas A

PDB-9c29:
Hexadecamer of NL4-3 WT HIV-1 intasome
Method: single particle / : Lyumkis D, Jing T, Zhang Z

EMDB-70530:
Tetrameric full-length HIV-1 integrase protein complex
Method: single particle / : Jing T, Lyumkis D, Shan Z

EMDB-36480:
CryoEM structure of isNS1 in complex with Fab56.2 and HDL
Method: single particle / : Chew BLA, Luo D

EMDB-36483:
CryoEM structure of isNS1 in complex with Fab56.2
Method: single particle / : Chew BLA, Luo D

EMDB-16730:
Cryo-EM structure of complement C5 in complex with nanobodies UNbC5-1 and UNbC5-2
Method: single particle / : De la O Becerra KI, Gros P

PDB-8cml:
Cryo-EM structure of complement C5 in complex with nanobodies UNbC5-1 and UNbC5-2
Method: single particle / : De la O Becerra KI, Gros P

EMDB-32839:
CryoEM structure of sNS1 complexed with Fab5E3
Method: single particle / : Shu B, Lok SM

EMDB-32840:
CryoEM structure of a dimer of loose sNS1 tetramer
Method: single particle / : Shu B, Lok SM

EMDB-32841:
CryoEM structure of stable sNS1 tetramer
Method: single particle / : Shu B, Ooi JSG, Lok SM

EMDB-32842:
CryoEM structure of loose sNS1 tetramer
Method: single particle / : Shu B, Lok SM

EMDB-32843:
CryoEM structure of sNS1 hexamer
Method: single particle / : Shu B, Ooi JSG

PDB-7wur:
CryoEM structure of sNS1 complexed with Fab5E3
Method: single particle / : Shu B, Lok SM

PDB-7wus:
CryoEM structure of a dimer of loose sNS1 tetramer
Method: single particle / : Shu B, Lok SM

PDB-7wut:
CryoEM structure of stable sNS1 tetramer
Method: single particle / : Shu B, Ooi JSG, Lok SM

PDB-7wuu:
CryoEM structure of loose sNS1 tetramer
Method: single particle / : Shu B, Lok SM

PDB-7wuv:
CryoEM structure of sNS1 hexamer
Method: single particle / : Shu B, Ooi JSG, Lok SM

EMDB-25606:
Zika Virus particle bound with IgM antibody DH1017 Fab fragment
Method: single particle / : Miller AS, Kuhn RJ

EMDB-13880:
Structure of the GPCR dimer Ste2 bound to an antagonist
Method: single particle / : Velazhahan V, Tate CG

EMDB-13882:
Structure of the ligand-free GPCR dimer Ste2
Method: single particle / : Velazhahan V, Tate CG

EMDB-13886:
Structure of the GPCR dimer Ste2 in the inactive-like state bound to agonist
Method: single particle / : Velazhahan V, Tate CG

EMDB-13887:
Structure of the GPCR dimer Ste2 in the active-like state bound to agonist
Method: single particle / : Velazhahan V, Tate CG

PDB-7qa8:
Structure of the GPCR dimer Ste2 bound to an antagonist
Method: single particle / : Velazhahan V, Tate CG

PDB-7qb9:
Structure of the ligand-free GPCR dimer Ste2
Method: single particle / : Velazhahan V, Tate CG

PDB-7qbc:
Structure of the GPCR dimer Ste2 in the inactive-like state bound to agonist
Method: single particle / : Velazhahan V, Tate CG

PDB-7qbi:
Structure of the GPCR dimer Ste2 in the active-like state bound to agonist
Method: single particle / : Velazhahan V, Tate CG

EMDB-11988:
Cryo-EM structure of complement C4b in complex with nanobody E3
Method: single particle / : Oosterheert W, De la O Becerra KI

EMDB-11989:
Cryo-EM structure of complement C4b in complex with nanobody B5
Method: single particle / : Oosterheert W, De la O Becerra KI

EMDB-11990:
Cryo-EM structure of complement C4b in complex with nanobody B12
Method: single particle / : Oosterheert W, De la O Becerra KI

PDB-7b2m:
Cryo-EM structure of complement C4b in complex with nanobody E3
Method: single particle / : Oosterheert W, De la O Becerra KI, van den Bos RM, Gros P

PDB-7b2p:
Cryo-EM structure of complement C4b in complex with nanobody B5
Method: single particle / : Oosterheert W, De la O Becerra KI, Gros P

PDB-7b2q:
Cryo-EM structure of complement C4b in complex with nanobody B12
Method: single particle / : Oosterheert W, De la O Becerra KI, Gros P

EMDB-11991:
Cryo-EM density map of complement C4b in complex with nanobody G3
Method: single particle / : Oosterheert W, De la O Becerra KI, Gros P

EMDB-11720:
Class D GPCR Ste2 dimer coupled to two G proteins
Method: single particle / : Velazhahan V, Tate C

PDB-7ad3:
Class D GPCR Ste2 dimer coupled to two G proteins
Method: single particle / : Velazhahan V, Tate C

EMDB-21992:
GLP-1 peptide hormone bound to Glucagon-Like peptide-1 (GLP-1) Receptor
Method: single particle / : Belousoff MJ, Zhang X

EMDB-21993:
Non peptide agonist CHU-128, bound to Glucagon-Like peptide-1 (GLP-1) Receptor
Method: single particle / : Belousoff MJ, Zhang X

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more