[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,535 items for (author: oka & t)

EMDB-62888:
Structure of SID-1 in complex with dsRNA (dodecameric form)
Method: single particle / : Murakoshi S, Kumazaki K, Kusakizako T, Nureki O

EMDB-47503:
Human ASIC1a at pH 8.5 with domain-swapped transmembrane domain
Method: single particle / : Hartfield KA, Cahill J, Baconguis I

EMDB-47504:
Human ASIC1a at pH 7.5 with domain-swapped transmembrane domain
Method: single particle / : Hartfield KA, Cahill J, Baconguis I

EMDB-47505:
Human ASIC1a at pH 7.5 with partial transmembrane domain
Method: single particle / : Hartfield KA, Cahill J, Baconguis I

EMDB-47506:
Human ASIC1a at pH 7.5 with linear transmembrane domain
Method: single particle / : Hartfield KA, Cahill J, Baconguis I

EMDB-47507:
Human ASIC1a at pH 6.5 with linear transmembrane domain
Method: single particle / : Hartfield KA, Cahill J, Baconguis I

EMDB-47508:
Human ASIC1a at pH 5.7 with domain-swapped transmembrane domain
Method: single particle / : Hartfield KA, Cahill J, Baconguis I

EMDB-47509:
Human ASIC1a at pH 5.7 with linear transmembrane domain
Method: single particle / : Hartfield KA, Cahill J, Baconguis I

EMDB-47510:
Human ASIC1a at pH 5.7 with rotated, domain-swapped transmembrane domain
Method: single particle / : Hartfield KA, Cahill J, Baconguis I

EMDB-47511:
Human ASIC1a at pH 7.5 in complex with MitTx
Method: single particle / : Hartfield KA, Yoshioka C, Cahill J, Baconguis I

EMDB-47512:
Human ASIC1a at pH 6.5 in complex with MitTx
Method: single particle / : Hartfield KA, Cahill J, Baconguis I

EMDB-47513:
Human ASIC1a at pH 8.5, T26V mutation
Method: single particle / : Hartfield KA, Cahill J, Baconguis I

PDB-9e4i:
Human ASIC1a at pH 7.5 in complex with MitTx
Method: single particle / : Hartfield KA, Yoshioka C, Cahill J, Baconguis I

EMDB-62886:
Structure of SID-1 in complex with dsRNA
Method: single particle / : Kumazaki K, Kusakizako T, Nishizawa T, Nureki O

EMDB-62887:
Structure of SID-1
Method: single particle / : Kumazaki K, Kusakizako T, Nishizawa T, Nureki O

EMDB-63560:
Cryo-EM structure of human 80S ribosome in complex with montanine
Method: single particle / : Sakai R, Tanaka Y, Sato K, Tsugita A, Matumoto K, Thaveepornkul L, Chimnaronk S, Takada A, Miyamoto H, Kurokawa R, Yoshida M, Yokoyama T, Evidente A, Tsuge Y, Watari H, Sumiya T

PDB-9m0p:
Cryo-EM structure of human 80S ribosome in complex with montanine
Method: single particle / : Sakai R, Tanaka Y, Sato K, Tsugita A, Matumoto K, Thaveepornkul L, Chimnaronk S, Takada A, Miyamoto H, Kurokawa R, Yoshida M, Yokoyama T, Evidente A, Tsuge Y, Watari H, Sumiya T

EMDB-70557:
Cardiac lambda-6 light chain amyloid AL-224L single protofilament
Method: helical / : Hicks CW, Gursky O, Huda N

PDB-9oka:
Cardiac lambda-6 light chain amyloid AL-224L single protofilament
Method: helical / : Hicks CW, Gursky O, Huda N

EMDB-72877:
N4 Empty Particle C6 Tail
Method: single particle / : Bellis NF, Cingolani G

EMDB-72880:
N4 Full Virion Portal
Method: single particle / : Bellis NF, Cingolani G

PDB-9yf5:
N4 Empty Particle C6 Tail
Method: single particle / : Bellis NF, Cingolani G

PDB-9yf8:
N4 Full Virion Portal
Method: single particle / : Bellis NF, Cingolani G

EMDB-44492:
Cryo-EM structure of importin alpha-1/beta bound to FG repeats
Method: single particle / : Ko Y, Cingolani G

PDB-9bfc:
Cryo-EM structure of importin alpha-1/beta bound to FG repeats
Method: single particle / : Ko Y, Cingolani G

EMDB-71768:
N4 vRNAP gp50 - Isolated RNAP Domain
Method: single particle / : Bellis NF, Lokareddy RK, Cingolani G

EMDB-71769:
N4 vRNAP gp50 - Closed Complex
Method: single particle / : Bellis NF, Lokareddy RK, Cingolani G

EMDB-71771:
N4 vRNAP gp50 - open complex
Method: single particle / : Bellis NF, Lokareddy RK, Cingolani G

EMDB-71773:
N4 vRNAP gp50 bound to P1 Promoter - Isolated RNAP Domain
Method: single particle / : Bellis NF, Lokareddy RK, Cingolani G

EMDB-71774:
N4 vRNAP gp50 bound to P1 promoter - closed complex
Method: single particle / : Bellis NF, Lokareddy RK, Cingolani G

PDB-9pnq:
N4 vRNAP gp50 - Isolated RNAP Domain
Method: single particle / : Bellis NF, Lokareddy RK, Cingolani G

PDB-9pnr:
N4 vRNAP gp50 - Closed Complex
Method: single particle / : Bellis NF, Lokareddy RK, Cingolani G

PDB-9pnt:
N4 vRNAP gp50 - open complex
Method: single particle / : Bellis NF, Lokareddy RK, Cingolani G

PDB-9pnv:
N4 vRNAP gp50 bound to P1 Promoter - Isolated RNAP Domain
Method: single particle / : Bellis NF, Lokareddy RK, Cingolani G

PDB-9pnw:
N4 vRNAP gp50 bound to P1 promoter - closed complex
Method: single particle / : Bellis NF, Lokareddy RK, Cingolani G

EMDB-63104:
Cryo-EM structure of GPR155 monomer in complex with cholesterol
Method: single particle / : Gao F, Zhang X, Li D, Pu H

EMDB-63106:
Cryo-EM structure of GPR155 contracted dimer in complex with cholesterol
Method: single particle / : Gao F, Zhang X, Li D, Han P

EMDB-63107:
Cryo-EM map of GPR155 extended dimer
Method: single particle / : Gao F, Zhang X, Li D, Han P

PDB-9lhq:
Cryo-EM structure of GPR155 monomer in complex with cholesterol
Method: single particle / : Gao F, Zhang X, Li D, Pu H

PDB-9lhv:
Cryo-EM structure of GPR155 contracted dimer in complex with cholesterol
Method: single particle / : Gao F, Zhang X, Li D, Han P

PDB-9lhx:
Rigid fitting model of GPR155 extended dimer
Method: single particle / : Gao F, Zhang X, Li D, Han P

EMDB-72062:
Polyclonal immune complex of Fab from mice sera binding the head of H5 HA after immunization with inactivated split A/bald eagle/FL/W22-134-OP/2022 Influenza virus vaccine adjuvanted with CpG
Method: single particle / : Andrade TG, Rodriguez AJ, Han J, Ward AB

EMDB-72063:
Polyclonal immune complex of Fab from mice sera binding the side of the head of H5 HA after immunization with inactivated split A/bald eagle/FL/W22-134-OP/2022 Influenza virus vaccine adjuvanted with CpG
Method: single particle / : Andrade TG, Rodriguez AJ, Han J, Ward AB

EMDB-72064:
Polyclonal immune complex of Fab from mice sera binding the esterase of H5 HA after immunization with inactivated split A/bald eagle/FL/W22-134-OP/2022 Influenza virus vaccine adjuvanted with CpG
Method: single particle / : Andrade TG, Rodriguez AJ, Han J, Ward AB

EMDB-72065:
Polyclonal immune complex of Fab from mice sera binding the top of N1 NA after immunization with inactivated split A/bald eagle/FL/W22-134-OP/2022 Influenza virus vaccine unadjuvanted
Method: single particle / : Andrade TG, Rodriguez AJ, Han J, Ward AB

EMDB-72066:
Polyclonal immune complex of Fab from mice sera binding the side of N1 NA after immunization with inactivated split A/bald eagle/FL/W22-134-OP/2022 Influenza virus vaccine adjuvanted with CpG
Method: single particle / : Andrade TG, Rodriguez AJ, Han J, Ward AB

EMDB-63854:
Cryo-EM map of MSMEG_3496 in complex with AcpM, size exclusion chromatography peak1
Method: single particle / : Gao F, Zhang X, Li D, Ma X

EMDB-63856:
Cryo-EM map of MSMEG_3496 in complex with AcpM, size exclusion chromatography peak2
Method: single particle / : Gao F, Zhang X, Li D, Ma X

EMDB-63860:
Cryo-EM structure of Mycobacterium tuberculosis MmpL5 in complex with AcpM
Method: single particle / : Gao F, Zhang X, Li D, Ma X

PDB-9u4t:
Cryo-EM map of MSMEG_3496 in complex with AcpM, size exclusion chromatography peak1
Method: single particle / : Gao F, Zhang X, Li D, Ma X

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more