[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 4,771 items for (author: oh & sc)

EMDB-72334:
Human mitochondrial ClpP in complex with OICR-18704 in the heptameric state
Method: single particle / : Uday AB, Zeytuni N, Goncalves M, Vahidi S

EMDB-72336:
Human mitochondrial ClpP in complex with OICR-18704 in a partially-engaged tetradecameric state (minimal opening)
Method: single particle / : Uday AB, Zeytuni N, Goncalves M, Vahidi S

EMDB-72337:
Human mitochondrial ClpP in complex with OICR-18704 in a partially-engaged tetradecameric state (intermediate opening)
Method: single particle / : Uday AB, Zeytuni N, Goncalves M, Vahidi S

EMDB-72338:
Human mitochondrial ClpP in complex with OICR-18704 in a partially-engaged tetradecameric state (maximal opening)
Method: single particle / : Uday AB, Zeytuni N, Goncalves M, Vahidi S

EMDB-72339:
Human mitochondrial ClpP V62A variant
Method: single particle / : Uday AB, Zeytuni N, Goncalves M, Vahidi S

EMDB-66115:
Cryo-EM structure of the LbCas12a-Lid2-crRNA-DNA complex
Method: single particle / : Omura SN, Warren Villegas R, Van der Oost J, Nureki O, Warren VR, Hirano H, Kusakizako T, Kise Y, Lebbink HGJ, Itoh Y

EMDB-75841:
Cryo-electron tomogram of cyanobacteria Prochlorococcus MED4
Method: electron tomography / : Parvate AD, Evans JE

EMDB-100006:
In situ structure of the class II BCR from Geobacter metallireducens
Method: subtomogram averaging / : Tamborrini D, Pascoa TC, Engel BD, Appel L, Kumar A, Kayastha K, Ermler U, Kettler T, Bohn S, Reif-Trauttmansdorff T, Schuller JM, Boll M

EMDB-100008:
In situ structure of the ETF-BCR complex from Geobacter metallireducens
Method: subtomogram averaging / : Tamborrini D, Pascoa TC, Engel BD, Appel L, Kumar A, Kayastha K, Ermler U, Kettler T, Bohn S, Reif-Trauttmansdorff T, Schuller JM, Boll M

EMDB-100009:
In situ structure of the 70S ribosome from Geobacter metallireducens
Method: subtomogram averaging / : Tamborrini D, Pascoa TC, Engel BD, Appel L, Kumar A, Kayastha K, Ermler U, Kettler T, Bohn S, Reif-Trauttmansdorff T, Schuller JM, Boll M

EMDB-100010:
In situ structure of the 100S disome from Geobacter metallireducens
Method: subtomogram averaging / : Tamborrini D, Pascoa TC, Engel BD, Appel L, Kumar A, Kayastha K, Ermler U, Kettler T, Bohn S, Reif-Trauttmansdorff T, Schuller JM, Boll M

EMDB-100043:
Cryo-electron tomogram of Geobacter metallireducens, dataset Geo02, Position 11_2
Method: electron tomography / : Tamborrini D, Pascoa TC, Engel BD, Appel L, Kumar A, Kayastha K, Ermler U, Kettler T, Bohn S, Reif-Trauttmansdorff T, Schuller JM, Boll M

EMDB-100060:
Cryo-electron tomogram of Geobacter metallireducens, dataset Geo02, Position 11
Method: electron tomography / : Tamborrini D, Pascoa TC, Engel BD, Appel L, Kumar A, Kayastha K, Ermler U, Kettler T, Bohn S, Reif-Trauttmansdorff T, Schuller JM, Boll M

EMDB-100061:
Cryo-electron tomogram of Geobacter metallireducens, dataset Geo02, Position 1_2
Method: electron tomography / : Tamborrini D, Pascoa TC, Engel BD, Appel L, Kumar A, Kayastha K, Ermler U, Kettler T, Bohn S, Reif-Trauttmansdorff T, Schuller JM, Boll M

EMDB-100062:
Cryo-electron tomogram of Geobacter metallireducens, dataset Geo02, Position 1
Method: electron tomography / : Tamborrini D, Pascoa TC, Engel BD, Appel L, Kumar A, Kayastha K, Ermler U, Kettler T, Bohn S, Reif-Trauttmansdorff T, Schuller JM, Boll M

EMDB-100067:
Cryo-electron tomogram of Geobacter metallireducens, dataset Geo02, Position 1_3
Method: electron tomography / : Tamborrini D, Pascoa TC, Engel BD, Appel L, Kumar A, Kayastha K, Ermler U, Kettler T, Bohn S, Reif-Trauttmansdorff T, Schuller JM, Boll M

EMDB-77155:
VIPR Binary Complex - Consensus Conformation
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77156:
VIPR Binary Complex with one filament
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77157:
VIPR Binary Complex with two filaments
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77176:
VIPR Ternary Complex with a pre-unwound dsDNA substrate, 11 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77183:
VIPR Ternary Complex with a pre-unwound dsDNA substrate, 12 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77184:
VIPR Ternary Complex with an ssRNA substrate, Closed Conformation
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77185:
VIPR Ternary Complex with an ssRNA substrate, Closed Conformation, 11 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77731:
VIPR Ternary Complex with an ssDNA substrate, 10 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77732:
VIPR Ternary Complex with an ssDNA substrate, 11 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77733:
P. fulva VIPR Ternary Complex with four subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77734:
VIPR Ternary Complex with an ssDNA substrate, 12 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77735:
VIPR Ternary Complex with a duplex dsDNA substrate, 5 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77736:
VIPR Ternary Complex with a duplex dsDNA substrate, 11 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77738:
VIPR Ternary Complex with a duplex dsDNA substrate, 7 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77739:
VIPR Ternary Complex with a duplex dsDNA substrate, 10 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77740:
VIPR Ternary Complex with a duplex dsDNA substrate, 9 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77742:
VIPR Ternary Complex with a duplex dsDNA substrate, 8 subunits
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-77745:
P. fulva VIPR Ternary Complex Consensus Conformation
Method: single particle / : Docter TA, Yoon PH, Zhang Z, Brohawn SG, Doudna JA

EMDB-59152:
T. cruzi topoisomerase II alpha bound to dsDNA and the covalent inhibitor IID432
Method: single particle / : Schenk A, Deniston C

PDB-32to:
T. cruzi topoisomerase II alpha bound to dsDNA and the covalent inhibitor IID432
Method: single particle / : Schenk A, Deniston C

EMDB-72403:
Alternative NBD1-binding geometry in channel-formed, ATP-bound, VX809-bound, T2a-nanobody-bound wild-type human CFTR (Composite map from PHENIX)
Method: single particle / : Hunt JF, Paige AS, Govaerts C, Goldberg PM, Wang C, Loughlin BJ, Kappes JC, Yang Z, Jiang F, Overtus M, Rich Z

EMDB-56657:
CTX/MthK complex
Method: single particle / : Qoraj D, Sprink T, Lange A

PDB-28no:
CTX/MthK complex
Method: single particle / : Qoraj D, Sprink T, Lange A

EMDB-76291:
Cryo-EM structure of human DDB1-CRBN-GSPT1 in complex with GT19630
Method: single particle / : Huang J, Chu HF, Tong L

PDB-12bp:
Cryo-EM structure of human DDB1-CRBN-GSPT1 in complex with GT19630
Method: single particle / : Huang J, Chu HF, Tong L

EMDB-48426:
Cryo-EM local map of six VRC35 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-48427:
Cryo-EM local map of dimeric VRC35 Fabs bound to N-linked glycans N126, N165, and N246 on influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-49628:
Composite map of three pairs of dimeric VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-49633:
Global map of six VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-74798:
Cryo-EM local density map of VRC35 Fab bound to N-linked glycans on the SARS-CoV-2 LP.8.1.9 spike protein
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-74801:
Cryo-EM map of VRC35 Fab bound to the SARS-CoV-2 LP.8.1.9 spike protein
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-74843:
Cryo-EM map of VRC35 Fab bound to the Lassa virus glycoprotein complex
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

PDB-9npm:
Composite map of three pairs of dimeric VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-52705:
Cryo-EM structure of PSII intermediate Psb27-PSII
Method: single particle / : Bohn S, Lo YK, Lambertz J, Furtges T, Rudack T, Nowaczyk MM, Schuller JM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more