[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 104 items for (author: norris & k)

EMDB-57178:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57179:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2, UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57180:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57298:
SKP1-FBXO22-UNC10088-NSD2 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57299:
CUL1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57301:
CUL1 C-term, RBX1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57302:
Consensus Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57303:
SKP1-FBXO22-UNC10088-NSD2 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57304:
CUL1-C-terminus-RBX1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57305:
SKP1-CUL1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57306:
Consensus Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57308:
SKP1-FBXO22-UNC10088-NSD2 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57309:
CUL1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57310:
CUL1 C-term, RBX1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57311:
Consensus Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

PDB-29hg:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

PDB-29hh:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2, UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

PDB-29hi:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-70676:
Cryo-EM Structure of the Escherichia phage HK446 Rip1 in complex with the Enterobacteria phage T6 small terminase
Method: single particle / : Patel PH, Maxwell KL, Norris MJ

PDB-9oox:
Cryo-EM Structure of the Escherichia phage HK446 Rip1 in complex with the Enterobacteria phage T6 small terminase
Method: single particle / : Patel PH, Maxwell KL, Norris MJ

EMDB-45157:
SARS-CoV-2 Nucleocapsid Dimerization Domain bound to Fab-NP1E9 and Fab-NP3B4
Method: single particle / : Landeras-Bueno S, Hariharan C, Diaz Avalos R, Ollmann Saphire E

EMDB-45158:
SARS-CoV-2 Nucleocapsid dimer complexed to 24 bp RNA
Method: single particle / : Landeras-Bueno S, Ollmann-Saphire E

PDB-9c2h:
SARS-CoV-2 Nucleocapsid Dimerization Domain bound to Fab-NP1E9 and Fab-NP3B4
Method: single particle / : Landeras-Bueno S, Hariharan C, Diaz Avalos R, Ollmann Saphire E

EMDB-44468:
Alkalihalobacillus halodurans (Aha) trp RNA binding attenuation protein (TRAP) mutant dTRAP with Trp
Method: single particle / : Yang H, Stachowski K, Foster M

EMDB-44472:
Alkalihalobacillus halodurans (Aha) trp RNA binding attenuation protein (TRAP) mutant dTRAP without Trp
Method: single particle / : Yang H, Stachowski K, Foster M

EMDB-44473:
Alkalihalobacillus halodurans (Aha) trp RNA binding attenuation protein (TRAP) mutant T49A/T52A dTRAP with Trp
Method: single particle / : Yang H, Stachowski K, Foster M

PDB-9bds:
Alkalihalobacillus halodurans (Aha) trp RNA binding attenuation protein (TRAP) mutant dTRAP with Trp
Method: single particle / : Yang H, Stachowski K, Foster M

PDB-9be7:
Alkalihalobacillus halodurans (Aha) trp RNA binding attenuation protein (TRAP) mutant dTRAP without Trp
Method: single particle / : Yang H, Stachowski K, Foster M

PDB-9be8:
Alkalihalobacillus halodurans (Aha) trp RNA binding attenuation protein (TRAP) mutant T49A/T52A dTRAP with Trp
Method: single particle / : Yang H, Stachowski K, Foster M

EMDB-45833:
KZ52 Fab fragment bound to Ebola GP, subtomogram average from a tight mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-45834:
KZ52 Fab fragment bound to Ebola GP, subtomogram average from a cylinder mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-45835:
3A6 Fab fragment bound to Ebola GP, subtomogram average from a cylinder mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-45836:
3A6 and KZ52 Fab fragments bound to Ebola GP, subtomogram average from a tight mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-45837:
3A6 and KZ52 Fab fragments bound to Ebola GP, subtomogram average from a cylinder mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-19474:
N.meningitidis NadV3 surface expressed homotrimeric antigen structure
Method: single particle / : Calvaresi V, Dello Iacono L, Borghi S, Luzzi E, Biolchi A, Benucci B, Ferlenghi I, Peschiera I, Giusti F, Fontana LE, Kan Z, Spinello Z, Merola M, Delany I, Rand KD, Norris N

EMDB-46920:
HCMV gH/UL116/UL141 3-mer complex, ectodomain
Method: single particle / : Norris MJ, Benedict CA, Kamil JP, Saphire EO

EMDB-46921:
Local Cryo-EM structure of HCMV gH/UL116 interaction
Method: single particle / : Norris MJ, Benedict CA, Kamil JP, Saphire EO

PDB-9dix:
HCMV gH/UL116/UL141 3-mer complex, ectodomain
Method: single particle / : Norris MJ, Benedict CA, Kamil JP, Saphire EO

PDB-9diy:
Local Cryo-EM structure of HCMV gH/UL116 interaction
Method: single particle / : Norris MJ, Benedict CA, Kamil JP, Saphire EO

EMDB-26434:
Structure of RecT protein from Listeria innoccua phage A118 in complex with 83-mer annealed duplex
Method: single particle / : Bell CE, Caldwell BJ

EMDB-26437:
Structure of RecT protein from Listeria innoccua phage A118 in complex with 83-mer ssDNA
Method: single particle / : Bell CE, Caldwell BJ

PDB-7ub2:
Structure of RecT protein from Listeria innoccua phage A118 in complex with 83-mer annealed duplex
Method: single particle / : Bell CE, Caldwell BJ

PDB-7ubb:
Structure of RecT protein from Listeria innoccua phage A118 in complex with 83-mer ssDNA
Method: single particle / : Bell CE, Caldwell BJ

EMDB-26195:
Structure of Lassa Virus glycoprotein (Josiah) bound to Fab 25.10C
Method: single particle / : Enriquez AS, Hastie KM

PDB-7tyv:
Structure of Lassa Virus glycoprotein (Josiah) bound to Fab 25.10C
Method: single particle / : Enriquez AS, Hastie KM

EMDB-24470:
Cryo-EM structure of precleavage Cre tetrameric complex
Method: single particle / : Stachowski K, Foster MP

EMDB-24471:
Cre recombinase mutant (D33A/A36V/R192A) in complex with loxA DNA hairpin
Method: single particle / : Stachowski K, Foster MP

EMDB-24472:
Heterodimer of Cre recombinase mutants D33A/A36V/R192A and R72E/L115D/R119D in complex with loxP DNA.
Method: single particle / : Stachowski K, Foster MP

PDB-7rhx:
Cryo-EM structure of precleavage Cre tetrameric complex
Method: single particle / : Stachowski K, Foster MP

PDB-7rhy:
Cre recombinase mutant (D33A/A36V/R192A) in complex with loxA DNA hairpin
Method: single particle / : Stachowski K, Foster MP

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more