[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 11,308 items for (author: min & b)

EMDB-65636:
Cryo-EM structure of inhibitor E822-1968 bound human urea transporter A2.
Method: single particle / : Huang S, Sun J

EMDB-65637:
Cryo-EM structure of inhibitor M353-0039 bound urea transporter A2.
Method: single particle / : Huang S, Sun J

PDB-9w4k:
Cryo-EM structure of inhibitor E822-1968 bound human urea transporter A2.
Method: single particle / : Huang S, Sun J

PDB-9w4l:
Cryo-EM structure of inhibitor M353-0039 bound urea transporter A2.
Method: single particle / : Huang S, Sun J

EMDB-66002:
Subtomogram averaging of SARS-CoV-2 spike-P17-IgG Gemini structure
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66003:
Subtomogram averaging of SARS-CoV-2 spike-P17-IgG solo structure
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66004:
Subtomogram averaging of spike-P17-IgG solo structure on fixed SARS-CoV-2
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66005:
Subtomogram averaging of SARS-CoV-2 spike-S309-IgG Gemini structure
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66006:
Subtomogram averaging of SARS-CoV-2 spike-S309-IgG solo structure in 1-RBD-up conformation
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66007:
Subtomogram averaging of SARS-CoV-2 spike-S309-IgG solo structure in closed conformation
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-80383:
Polyrod without P-ring formed by FlgG (G65V) from the Salmonella TH26292 strain
Method: single particle / : Yamaguchi T, Kato T, Minamino T, Namba K

EMDB-64756:
Apo SLC36A1
Method: single particle / : Zhang SS

EMDB-64757:
SLC36A1 bound to D-cycloserine
Method: single particle / : Zhang SS

EMDB-64759:
SLC36A1 bound to D-serine
Method: single particle / : Zhang SS

EMDB-64762:
SLC36A1 bound to D-NPA
Method: single particle / : Zhang SS

PDB-9v3t:
Apo SLC36A1
Method: single particle / : Zhang SS

PDB-9v3v:
SLC36A1 bound to D-cycloserine
Method: single particle / : Zhang SS

PDB-9v3x:
SLC36A1 bound to D-serine
Method: single particle / : Zhang SS

PDB-9v3z:
SLC36A1 bound to D-NPA
Method: single particle / : Zhang SS

EMDB-73392:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody AB2-122 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Jonaid G, Batra H, Kibria G, Chen B, Alt FW

EMDB-73457:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody S212 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Batra H, Zhang J, Jonaid G, Kibria G, Chen B, Alt FW

PDB-9ysg:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody AB2-122 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Jonaid G, Batra H, Kibria G, Chen B, Alt FW

PDB-9ytc:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody S212 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Batra H, Zhang J, Jonaid G, Kibria G, Chen B, Alt FW

EMDB-66217:
Cryo-electron tomogram of vesicular stomatitis virus (VSV) with rabies virus glycoprotein
Method: electron tomography / : Liu L, Zheng Q, Li S, Xia N

EMDB-66218:
Cryo-electron tomogram of vesicular stomatitis virus (VSV) with rabies virus glycoprotein
Method: electron tomography / : Liu L, Zheng Q, Li S, Xia N

EMDB-75163:
Yeast Blm10 apo Structure
Method: single particle / : Walsh Jr RM, Rawson S, Fermin Perez E, Venclovaite U, Hanna J

EMDB-75294:
C2 symmetry expanded and subtracted 20S Proteasome, Blm10, Fub1 Complex Halfmer
Method: single particle / : Walsh Jr RM, Rawson S, Fermin Perez E, Venclovaite U, Hanna J

EMDB-75334:
20S Alpha 3 Deletion proteasome core particle in complex with Fub1 and Blm10
Method: single particle / : Walsh Jr RM, Rawson S, Fermin Perez E, Venclovaite U, Hanna J

EMDB-75393:
C2 expanded and subtracted 20S Alpha 3 Deletion proteasome core particle in complex with Blm10, Halfmer
Method: single particle / : Walsh Jr RM, Rawson S, Fermin Perez E, Venclovaite U, Hanna J

EMDB-75436:
20S Alpha 3 Deletion proteasome core particle in complex with Blm10
Method: single particle / : Walsh Jr RM, Rawson S, Fermin Perez E, Venclovaite U, Hanna J

PDB-10gx:
Yeast Blm10 apo Structure
Method: single particle / : Walsh Jr RM, Rawson S, Fermin Perez E, Venclovaite U, Hanna J

PDB-10mt:
C2 symmetry expanded and subtracted 20S Proteasome, Blm10, Fub1 Complex Halfmer
Method: single particle / : Walsh Jr RM, Rawson S, Fermin Perez E, Venclovaite U, Hanna J

PDB-10og:
20S Alpha 3 Deletion proteasome core particle in complex with Fub1 and Blm10
Method: single particle / : Walsh Jr RM, Rawson S, Fermin Perez E, Venclovaite U, Hanna J

PDB-10qt:
C2 expanded and subtracted 20S Alpha 3 Deletion proteasome core particle in complex with Blm10, Halfmer
Method: single particle / : Walsh Jr RM, Rawson S, Fermin Perez E, Venclovaite U, Hanna J

PDB-10sj:
20S Alpha 3 Deletion proteasome core particle in complex with Blm10
Method: single particle / : Walsh Jr RM, Rawson S, Fermin Perez E, Venclovaite U, Hanna J

EMDB-73448:
Structure of Tau SF from LATE (case 1)
Method: helical / : Rana JK, Mosalaganti S

EMDB-73449:
Structure of Tau PHF from LATE (case 1)
Method: helical / : Rana JK, Mosalaganti S

EMDB-73450:
Structure of Tau CTE from LATE (case 1)
Method: helical / : Rana JK, Mosalaganti S

EMDB-73451:
Structure of Tau SF from LATE (case 2)
Method: helical / : Rana JK, Mosalaganti S

EMDB-73452:
Structure of Tau PHF from LATE (case 2)
Method: helical / : Rana JK, Mosalaganti S

EMDB-73453:
Structure of Tau CTE from LATE (case 2)
Method: helical / : Rana JK, Mosalaganti S

EMDB-68177:
C5a-desArg bound C5aR2 in complex with beta-arrestin1
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

EMDB-68262:
C5a bound C5aR2 in complex with beta-arrestin1
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

EMDB-68263:
C5a bound C5aR1 in complex with beta-arrestin1
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

EMDB-68264:
C5a bound C5aR1 in complex with beta-arrestin1
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

EMDB-68516:
C5a bound C5aR2 in complex with beta-arrestin1
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

EMDB-68517:
C5a bound C5aR2 in complex with beta-arrestin1(focused on Receptor)
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

EMDB-68520:
C5a bound C5aR1(V2R C tail) in complex with beta-arrestin1 (Focus on Receptor)
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

EMDB-68524:
C5a bound C5aR1(V2R C tail) in complex with beta-arrestin1
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

EMDB-68525:
C5a bound C5aR1(V2R C tail) in complex with beta-arrestin1 (Focus on Arrestin)
Method: single particle / : Qin J, Cai C, Shan M, Zhang Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more