[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 259 items for (author: miller & je)

EMDB-49949:
SARS-CoV M protein dimer in complex with JNJ-9676 and FAb B
Method: single particle / : Mann MK, Abeywickrema P

EMDB-49950:
SARS-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

EMDB-49951:
MERSmut-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

PDB-9nz3:
SARS-CoV M protein dimer in complex with JNJ-9676 and FAb B
Method: single particle / : Mann MK, Abeywickrema P

PDB-9nz4:
SARS-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

PDB-9nz5:
MERSmut-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

EMDB-47927:
CryoEM Structure Of Respiratory Syncytial Virus Polymerase in complex with Novel Non-Nucleoside Inhibitor Compound 16
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney C

EMDB-47931:
CryoEM map of Respiratory Syncytial Virus Polymerase with Non-Nucleoside Inhibitor compound 21
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney S

PDB-9ecv:
CryoEM Structure Of Respiratory Syncytial Virus Polymerase in complex with Novel Non-Nucleoside Inhibitor Compound 16
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney C

PDB-9ed2:
CryoEM map of Respiratory Syncytial Virus Polymerase with Non-Nucleoside Inhibitor compound 21
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney S

EMDB-46727:
Structure of AG11-2F01 Fab in complex with A/Solomon Islands/3/2006 (H1N1) influenza virus hemagglutinin
Method: single particle / : Mou Z, Lei R, Dai X, Wu N

PDB-9dbx:
Structure of AG11-2F01 Fab in complex with A/Solomon Islands/3/2006 (H1N1) influenza virus hemagglutinin
Method: single particle / : Mou Z, Lei R, Dai X, Wu N

EMDB-45930:
Structure of 16.ND.92 Fab in complex with A/Solomon Islands/3/2006(H1N1) influenza virus Hemagglutinin
Method: single particle / : Ouyang WO, Pholcharee T, Wu NC

PDB-9cu7:
Structure of 16.ND.92 Fab in complex with A/Solomon Islands/3/2006(H1N1) influenza virus Hemagglutinin
Method: single particle / : Ouyang WO, Pholcharee T, Wu NC

EMDB-70983:
CryoEM structure of hook-filament junction complex from Shewanella oneidensis
Method: single particle / : Lou Q, Fan HC, Liu Y, Miller JF, Huang Y, Zhou ZH

EMDB-70984:
CryoEM structure of curved flagellar filament from Shewanella oneidensis
Method: single particle / : Lou Q, Fan HC, Liu Y, Miller JF, Huang Y, Zhou ZH

EMDB-70985:
CryoEM structure of FlaA filament from Shewanella oneidensis
Method: single particle / : Qing L, Fan HC, Liu Y, Miller JF, Huang Y, Zhou ZH

EMDB-70986:
CryoEM structure of FlaB filament from Shewanella oneidensis
Method: single particle / : Qing L, Fan HC, Liu Y, Miller JF, Huang Y, Zhou ZH

EMDB-70987:
CryoEM structure of hook from Shewanella oneidensis
Method: single particle / : Lou Q, Fan HC, Liu Y, Miller JF, Huang Y, Zhou ZH

PDB-9oxj:
CryoEM structure of FlaA filament from Shewanella oneidensis
Method: single particle / : Qing L, Fan HC, Liu Y, Miller JF, Huang Y, Zhou ZH

PDB-9oxk:
CryoEM structure of FlaB filament from Shewanella oneidensis
Method: single particle / : Qing L, Fan HC, Liu Y, Miller JF, Huang Y, Zhou ZH

EMDB-48846:
CryoEM structure Of Respiratory Syncytial Virus Polymerase with novel non-nucleoside inhibitor compound 22
Method: single particle / : Yin Y, Yu X, Kalin JH, Tran MT, Sharma S

PDB-9n36:
CryoEM structure Of Respiratory Syncytial Virus Polymerase with novel non-nucleoside inhibitor compound 22
Method: single particle / : Yin Y, Yu X, Kalin JH, Tran MT, Sharma S

EMDB-45412:
Cryo-EM Structure of the Human Neutralizing Antibody 5-1 in Complex with Prefusion Human Metapneumovirus F Glycoprotein
Method: single particle / : Guo LQ, McLellan JS

EMDB-44403:
Cryo-EM of Hyper2 tube, ~27 nm diameter
Method: helical / : Sonani RR, Miller JG, Conticello V, Egelman EH

EMDB-44404:
Cryo-EM of Hyper2 tube, ~24 nm diameter
Method: helical / : Sonani RR, Miller JG, Conticello V, Egelman EH

PDB-9bab:
Cryo-EM of Hyper2 tube, ~27 nm diameter
Method: helical / : Sonani RR, Miller JG, Conticello V, Egelman EH

PDB-9bac:
Cryo-EM of Hyper2 tube, ~24 nm diameter
Method: helical / : Sonani RR, Miller JG, Conticello V, Egelman EH

EMDB-48263:
Cryo-EM structure of Human NLRP3 complex with compound 1
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X, Prieri MLC, Bontempi L, Embrechts S, Paesmans I, Bassi M, Bhattacharya A, Roman SC, Hoog SD, Demin S, Gijsen HJM, Hache G, Jacobs T, Jerhaoui S, Leenaerts J, Lutter FH, Matico R, Oehlrich D, Perrier M, Ryabchuk P, Schepens W, Sharma S, Somers M, Suarez J, Surkyn M, Opdenbosch NV, Verhulst T, Bottelbergs A

EMDB-48288:
Human NLRP3 complex with compound 2 in the closed hexamer
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X

EMDB-48289:
Cryo-EM structure of Human NLRP3 complex with compound 3
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X, Prieri MLC, Bontempi L, Embrechts S, Paesmans I, Bassi M, Bhattacharya A, Roman SC, Hoog SD, Demin S, Gijsen HJM, Hache G, Jacobs T, Jerhaoui S, Leenaerts J, Lutter FH, Matico R, Oehlrich D, Perrier M, Ryabchuk P, Schepens W, Sharma S, Somers M, Suarez J, Surkyn M, Opdenbosch NV, Verhulst T, Bottelbergs A

PDB-9mgy:
Cryo-EM structure of Human NLRP3 complex with compound 1
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X, Prieri MLC, Bontempi L, Embrechts S, Paesmans I, Bassi M, Bhattacharya A, Roman SC, Hoog SD, Demin S, Gijsen HJM, Hache G, Jacobs T, Jerhaoui S, Leenaerts J, Lutter FH, Matico R, Oehlrich D, Perrier M, Ryabchuk P, Schepens W, Sharma S, Somers M, Suarez J, Surkyn M, Opdenbosch NV, Verhulst T, Bottelbergs A

PDB-9mie:
Human NLRP3 complex with compound 2 in the closed hexamer
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X

PDB-9mig:
Cryo-EM structure of Human NLRP3 complex with compound 3
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X, Prieri MLC, Bontempi L, Embrechts S, Paesmans I, Bassi M, Bhattacharya A, Roman SC, Hoog SD, Demin S, Gijsen HJM, Hache G, Jacobs T, Jerhaoui S, Leenaerts J, Lutter FH, Matico R, Oehlrich D, Perrier M, Ryabchuk P, Schepens W, Sharma S, Somers M, Suarez J, Surkyn M, Opdenbosch NV, Verhulst T, Bottelbergs A

EMDB-46994:
Cryo-EM structure of the SFV009 3G01 Fab in complex with A/California/04/2009
Method: single particle / : Fernandez Quintero ML, Ferguson JA, Han J, Ward AB

PDB-9dm0:
Cryo-EM structure of the SFV009 3G01 Fab in complex with A/California/04/2009
Method: single particle / : Fernandez Quintero ML, Ferguson JA, Han J, Ward AB

EMDB-43745:
SARS-CoV-2 M protein dimer in complex with JNJ-9676 and Fab-B
Method: single particle / : Yin Y, Van Damme E

PDB-8w2e:
SARS-CoV-2 M protein dimer in complex with JNJ-9676 and Fab-B
Method: single particle / : Yin Y, Van Damme E

EMDB-46855:
Cryo-EM structure of NLRP3 complex with Compound C
Method: single particle / : Matico R, Grauwen K, Van Gool M, Muratore EM, Yu X, Abdiaj I, Adhikary S, Adriaensen I, Aranzazu GM, Alcazar J, Bassi M, Brisse E, Canellas S, Chaudhuri S, Chauhan D, Delgado F, Dieguez-Vazquez A, Du Jardin M, Eastham V, Finley M, Jacobs T, Keustermans K, Kuhn R, Llaveria J, Leenaerts J, Linares ML, Martin ML, Martinez C, Miller R, Munoz FM, Nooyens A, Perez LB, Perrier M, Pietrak B, Serre J, Sharma S, Somers M, Suarez J, Tresadern G, Trabanco AA, Van den Bulck D, Van Hauwermeiren F, Varghese T, Vega JA, Youssef SA, Edwards MJ, Oehlrich D, Van Opdenbosch N

PDB-9dh3:
Cryo-EM structure of NLRP3 complex with Compound C
Method: single particle / : Matico R, Grauwen K, Van Gool M, Muratore EM, Yu X, Abdiaj I, Adhikary S, Adriaensen I, Aranzazu GM, Alcazar J, Bassi M, Brisse E, Canellas S, Chaudhuri S, Chauhan D, Delgado F, Dieguez-Vazquez A, Du Jardin M, Eastham V, Finley M, Jacobs T, Keustermans K, Kuhn R, Llaveria J, Leenaerts J, Linares ML, Martin ML, Martinez C, Miller R, Munoz FM, Nooyens A, Perez LB, Perrier M, Pietrak B, Serre J, Sharma S, Somers M, Suarez J, Tresadern G, Trabanco AA, Van den Bulck D, Van Hauwermeiren F, Varghese T, Vega JA, Youssef SA, Edwards MJ, Oehlrich D, Van Opdenbosch N

EMDB-51935:
Ex vivo cannulae fiber structure of Pyrodictium abyssi
Method: helical / : Sleutel M, Remaut H

PDB-9h8b:
Ex vivo cannulae fiber structure of Pyrodictium abyssi
Method: helical / : Sleutel M, Remaut H

EMDB-47241:
Cryo-EM structure of hemagglutinin H5 A/Texas/37/2024 in complex with LSTa and antibody CR9114
Method: single particle / : Fernandez-Quintero ML, Han J, Rodriguez AJ, Ward AB

PDB-9dwe:
Cryo-EM structure of hemagglutinin H5 A/Texas/37/2024 in complex with LSTa and antibody CR9114
Method: single particle / : Fernandez-Quintero ML, Han J, Rodriguez AJ, Ward AB

EMDB-43092:
E.coli PNPase in complex with single 8-oxoG RNA
Method: single particle / : Kim W, Zhang YJ

EMDB-43093:
E.coli PNPase in complex with double 8-oxoG RNA
Method: single particle / : Kim W, Zhang YJ

PDB-8vah:
E.coli PNPase in complex with single 8-oxoG RNA
Method: single particle / : Kim W, Zhang YJ

PDB-8vak:
E.coli PNPase in complex with double 8-oxoG RNA
Method: single particle / : Kim W, Zhang YJ

EMDB-43813:
VIR-7229 Fab fragment bound the SARS-CoV-2 BA.2.86 spike trimer (local refinement of the BA 2.86 RBD/VIR-7229 VHVL)
Method: single particle / : Park YJ, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-43842:
VIR-7229 Fab fragment bound the BA.2.86 spike trimer (global refinement)
Method: single particle / : Tortorici MA, Park YJ, Veelser D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more